| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is mtsB [H]
Identifier: 21228530
GI number: 21228530
Start: 2897978
End: 2898805
Strand: Direct
Name: mtsB [H]
Synonym: MM_2428
Alternate gene names: 21228530
Gene position: 2897978-2898805 (Clockwise)
Preceding gene: 21228529
Following gene: 21228531
Centisome position: 70.75
GC content: 47.58
Gene sequence:
>828_bases ATGATCAGGCATATTGACATCGCAGTCCAGAAGATTTTCGAGATGAAAGAAAAAGAACCTGCGAAATTCAAAAAACTTAT TGATGAAGGGATCATGATCGGCCTCGGAGTGGACCTTGGAGACAGGAGCCGGGAAGAGTACACTGCAGGGCACATTAAGG AGCAGAGCAGGCCGAAAGACCCCGATTATGCAGCCGTAACAGAGGCAGTGATTGAAGGAGATAGCGAGGAAACTGTAAGA CTCACAGTTGCCCTGCTTGAAAAAGGAAAAGACCCTACGGACCTTGTCTTAAATGCCCTTATGCCGGGAATTCAGACCGT TTGTGAGCTTTACGATATCGGAGAGAGTTATATGCCTGAGATCCTGCTGGCAAATGAGGCTCTCATAGGAGGGGTAAAAC TCTGTCAGGAAAGGATCGGAGAGATCCGTTACGAGGGAAAAGTGGTATCCCTTGTTATTGAAGGAGACCTTCACGATATA GGCAAGAACATTGTAGCAGCTATCCTCAGGGCAAACGGTTTCGAAGTGGTTGACCTCGGAAACGACATAACAGTGGAAGC AGCCGTCAAAGCCGTAAAAGCAGCAAATGCCGACCTTGTTGTGGGAACAACCCTCATGAGTACAACAAAAGAGGGACTCA AAGTTCTTGCAGAGGTTCTGGAATCCGAAGATGTCCCTGTAGCCTGTGGAGGGGCTGCCGTAGACAGACGCTTTGTTGAG ACCTTCTGTAACTCAGTGTATGGAAAAACCCCGCTTGACGCAGTAAAAATTGCAAAAAATATCTGTGCAGGAAAGAGCTG GAAAGAAGTCCGCAATGACCTTCACTGA
Upstream 100 bases:
>100_bases CTCCAATCCCAAGATATGATGACGTTGAAGATCTTATCAGGCAGATTGGAGTCGGCATCGGGCGAAACATGAAAGAAAAC GTTCTGGGAGGGATGCAGGA
Downstream 100 bases:
>100_bases TTTTCTTTCCTTTTCCTTCCCTTATTTTTTTCTTTTTTCAGTTCTTTATTTGTAACTATTCAGGTAGCCTTAACGAGGCT ACACATTTTTCCTCGTTCCG
Product: methylthiol:coenzyme M methyltransferase
Products: L-Methionine; 5,6,7,8-Tetrahydrofolate [C]
Alternate protein names: NA
Number of amino acids: Translated: 275; Mature: 275
Protein sequence:
>275_residues MIRHIDIAVQKIFEMKEKEPAKFKKLIDEGIMIGLGVDLGDRSREEYTAGHIKEQSRPKDPDYAAVTEAVIEGDSEETVR LTVALLEKGKDPTDLVLNALMPGIQTVCELYDIGESYMPEILLANEALIGGVKLCQERIGEIRYEGKVVSLVIEGDLHDI GKNIVAAILRANGFEVVDLGNDITVEAAVKAVKAANADLVVGTTLMSTTKEGLKVLAEVLESEDVPVACGGAAVDRRFVE TFCNSVYGKTPLDAVKIAKNICAGKSWKEVRNDLH
Sequences:
>Translated_275_residues MIRHIDIAVQKIFEMKEKEPAKFKKLIDEGIMIGLGVDLGDRSREEYTAGHIKEQSRPKDPDYAAVTEAVIEGDSEETVR LTVALLEKGKDPTDLVLNALMPGIQTVCELYDIGESYMPEILLANEALIGGVKLCQERIGEIRYEGKVVSLVIEGDLHDI GKNIVAAILRANGFEVVDLGNDITVEAAVKAVKAANADLVVGTTLMSTTKEGLKVLAEVLESEDVPVACGGAAVDRRFVE TFCNSVYGKTPLDAVKIAKNICAGKSWKEVRNDLH >Mature_275_residues MIRHIDIAVQKIFEMKEKEPAKFKKLIDEGIMIGLGVDLGDRSREEYTAGHIKEQSRPKDPDYAAVTEAVIEGDSEETVR LTVALLEKGKDPTDLVLNALMPGIQTVCELYDIGESYMPEILLANEALIGGVKLCQERIGEIRYEGKVVSLVIEGDLHDI GKNIVAAILRANGFEVVDLGNDITVEAAVKAVKAANADLVVGTTLMSTTKEGLKVLAEVLESEDVPVACGGAAVDRRFVE TFCNSVYGKTPLDAVKIAKNICAGKSWKEVRNDLH
Specific function: Acts as a methyl group carrier between mtbB and mtbA [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 B12-binding N-terminal domain [H]
Homologues:
Organism=Homo sapiens, GI169790923, Length=167, Percent_Identity=25.748502994012, Blast_Score=65, Evalue=7e-11, Organism=Escherichia coli, GI1790450, Length=177, Percent_Identity=28.2485875706215, Blast_Score=77, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17535405, Length=219, Percent_Identity=26.027397260274, Blast_Score=69, Evalue=2e-12,
Paralogues:
None
Copy number: 513 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 1320 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006158 - InterPro: IPR003759 - InterPro: IPR012741 [H]
Pfam domain/function: PF02310 B12-binding; PF02607 B12-binding_2 [H]
EC number: 2.1.1.13 [C]
Molecular weight: Translated: 29879; Mature: 29879
Theoretical pI: Translated: 4.60; Mature: 4.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRHIDIAVQKIFEMKEKEPAKFKKLIDEGIMIGLGVDLGDRSREEYTAGHIKEQSRPKD CCCHHHHHHHHHHHHHCCCHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCC PDYAAVTEAVIEGDSEETVRLTVALLEKGKDPTDLVLNALMPGIQTVCELYDIGESYMPE CCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCH ILLANEALIGGVKLCQERIGEIRYEGKVVSLVIEGDLHDIGKNIVAAILRANGFEVVDLG HHHHHHHHHHHHHHHHHHHHCEEECCEEEEEEEECCHHHHHHHHHHHHHHCCCEEEEECC NDITVEAAVKAVKAANADLVVGTTLMSTTKEGLKVLAEVLESEDVPVACGGAAVDRRFVE CCEEHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHH TFCNSVYGKTPLDAVKIAKNICAGKSWKEVRNDLH HHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHCCC >Mature Secondary Structure MIRHIDIAVQKIFEMKEKEPAKFKKLIDEGIMIGLGVDLGDRSREEYTAGHIKEQSRPKD CCCHHHHHHHHHHHHHCCCHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCC PDYAAVTEAVIEGDSEETVRLTVALLEKGKDPTDLVLNALMPGIQTVCELYDIGESYMPE CCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCH ILLANEALIGGVKLCQERIGEIRYEGKVVSLVIEGDLHDIGKNIVAAILRANGFEVVDLG HHHHHHHHHHHHHHHHHHHHCEEECCEEEEEEEECCHHHHHHHHHHHHHHCCCEEEEECC NDITVEAAVKAVKAANADLVVGTTLMSTTKEGLKVLAEVLESEDVPVACGGAAVDRRFVE CCEEHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHH TFCNSVYGKTPLDAVKIAKNICAGKSWKEVRNDLH HHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: ATP; Cobinamide; S-adenosyl-L-methionine [C]
Metal ions: Mg2+ [C]
Kcat value (1/min): 500-780 [C]
Specific activity: 3.8
Km value (mM): 0.035 {S-methyltetrahydrofolate}} 0.0016 {S-adenosyl-L-methionine}} 0.00065 {S-adenosyl-L-methionine}} 0.06 {methyltetrahydrofolate}} 0.03 {methyltetrahydrofolate}} 0.016 {homocysteine}} [C]
Substrates: 5-Methyltetrahydrofolate; L-Homocysteine [C]
Specific reaction: 5-Methyltetrahydrofolate + L-Homocysteine --> L-Methionine + 5,6,7,8-Tetrahydrofolate [C]
General reaction: Methyl group transfer [C]
Inhibitor: 5, 6-Dimethyl benzimidazole; alpha-Ribazole 3'-phosphate; Be2+; Cobinamide; Propyl iodide; Sr2+ [C]
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12125824 [H]