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The map label for this gene is rfbA [H]

Identifier: 21228317

GI number: 21228317

Start: 2639707

End: 2640468

Strand: Reverse

Name: rfbA [H]

Synonym: MM_2215

Alternate gene names: 21228317

Gene position: 2640468-2639707 (Counterclockwise)

Preceding gene: 21228318

Following gene: 21228316

Centisome position: 64.46

GC content: 37.53

Gene sequence:

>762_bases
ATGTATATTTTTGAATACAGCGAGTTAATCCGAAATCTGGTAATAAGCGACCTCAAGGTCAAATACCAGAGTTCTTTCTT
AGGTTTTGCCTGGTCGATGTTGAATCCGTTATTGATGATGTTAGTATTATATGCTGTGTTTCAAAACATTTTCAAGTTCG
AACAGGAACATTTCGCTCTATATCTTCTTATAGGAATCATTGCGTGGCGTTTTCTATCAATCGGGACTATGACAGCCATG
GGTTCCATTGTCGGGAAACCCAGTCTTGTAACTAAGATTTATATTCCAAGAGAAATACTTACGTTCAGTATTACTATGTC
AGCATTCATCAGTTCTATACTTGAATTTACAGTGCTCATACCCTTAATGCTGATACTGGGAGCTCCAATATCAATAACTA
TATTGCTATTTCCAGTAGTTCACGCACTGTATTTTATTATTGTGTACGGGCTCAGCCTTGTACTTTCTGCCTTATATGTT
TATTTCCGAGACTTAAATCAAATATGGGATATCCTTCTTCAGATTGGGTTTTACGTGTCCCCTATTATATATCCGCTTAC
TATGGTACCTGAAAAATATCTCCTATATTATACCTTGAATCCTATCACTCGCTTAATAATGATGTACAGGGACATCTTAT
TGTTCGGCAATTTTCCTACGGTCCTTGATTTTTTAATCGTTGGCGGCTTCGGAGTAGTATTTTTAGCATTTGGGTCTGCA
GTCTTCAAGAGGCTGTCCTTAAGGTTTGCGGAAGAGGTGTAA

Upstream 100 bases:

>100_bases
CTTGAAGGATTCTGGAGTGACGCGGGTACTTTTGAATCTTTATTCCGGGCAAGTGAGCTTGTAAAAAACTTAAATAATAA
AAACTAACGGAAAAACGAAT

Downstream 100 bases:

>100_bases
AAGTTGCAAGGGTTAAATTTTGGCTCAAATATGAAAGAAAAAAATAAAGAAGAATACGCTATCGAAGTTAATAATGTGTC
AAAAAGTTTCAGGATTCCCC

Product: polysaccharide ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MYIFEYSELIRNLVISDLKVKYQSSFLGFAWSMLNPLLMMLVLYAVFQNIFKFEQEHFALYLLIGIIAWRFLSIGTMTAM
GSIVGKPSLVTKIYIPREILTFSITMSAFISSILEFTVLIPLMLILGAPISITILLFPVVHALYFIIVYGLSLVLSALYV
YFRDLNQIWDILLQIGFYVSPIIYPLTMVPEKYLLYYTLNPITRLIMMYRDILLFGNFPTVLDFLIVGGFGVVFLAFGSA
VFKRLSLRFAEEV

Sequences:

>Translated_253_residues
MYIFEYSELIRNLVISDLKVKYQSSFLGFAWSMLNPLLMMLVLYAVFQNIFKFEQEHFALYLLIGIIAWRFLSIGTMTAM
GSIVGKPSLVTKIYIPREILTFSITMSAFISSILEFTVLIPLMLILGAPISITILLFPVVHALYFIIVYGLSLVLSALYV
YFRDLNQIWDILLQIGFYVSPIIYPLTMVPEKYLLYYTLNPITRLIMMYRDILLFGNFPTVLDFLIVGGFGVVFLAFGSA
VFKRLSLRFAEEV
>Mature_253_residues
MYIFEYSELIRNLVISDLKVKYQSSFLGFAWSMLNPLLMMLVLYAVFQNIFKFEQEHFALYLLIGIIAWRFLSIGTMTAM
GSIVGKPSLVTKIYIPREILTFSITMSAFISSILEFTVLIPLMLILGAPISITILLFPVVHALYFIIVYGLSLVLSALYV
YFRDLNQIWDILLQIGFYVSPIIYPLTMVPEKYLLYYTLNPITRLIMMYRDILLFGNFPTVLDFLIVGGFGVVFLAFGSA
VFKRLSLRFAEEV

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbB [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 29086; Mature: 29086

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHCC
>Mature Secondary Structure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HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]