| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21228210
Identifier: 21228210
GI number: 21228210
Start: 2519608
End: 2521143
Strand: Reverse
Name: 21228210
Synonym: MM_2108
Alternate gene names: NA
Gene position: 2521143-2519608 (Counterclockwise)
Preceding gene: 21228211
Following gene: 21228209
Centisome position: 61.55
GC content: 33.01
Gene sequence:
>1536_bases ATGGGATTATTGGTAATATTGAATATAGTAATGAGAATTCCCAGCATACCTCATGAGAAGGGTTATGATTCTTTCTTTAT ACACTCACTTGCAAACTCCGTTGCAAATTTTGGGGTTGCACAGTGGTGGATTAACTGGATGTCTGTCTTTGGGCTGTATC CTTATTCTTACGCCAGCGCTGTTCCTTTTACACTTTCTGGCATGTCACAACTGACTGGCATAAGGATGGAAATAGTAATA CTACTTTTCTGCGTACTTCTGGGTCTATTTAGCATATTTGCATCATATTCGTTGGCAACAGTTCTCTATGACAATTTTCT TCATAGATTTTTATTTGCAGTTATATTTTCTTCGTCTGCAGGCACTCTGAACCTCACAACATGGGAAATAACCACACGTG CTCAAATCCTGGTTTTCTTTCCATTTTTACTATATTTATTATTTCAAATAATAAAATTTAAAACTAAATTTGTAATGCTT TTTATTGTGACCGCATTATTGCTACTTGCAACTCACCACTTTGTTTATATGGGATTATTTTATTCAGGCTTGATATTTAT TGTTGCTCTCATATACAAATTAAATCGAAACCAACCCTTCCAGATTCAAAAAACCCAACTGAGGAACATCAATCTTAATT ATATGTATATTTCAAGTGTATTTTTTCTCATAATTTTAATTTTCTTATATGGTAGTAAATGGGGTTTAATAACTTCAGGC TCCAGATATGCCTGGATAATAGATATACTAATGATTACAGGCAGAAATGTGGGATTAACCTTACTACTTTCAATTGGCGC GCTTATATATTATATATTCAAAAAGGACAAATTGCTGGACGAGTGGGCAATTTTGATTTGTTTAATTCCAACGTTGATAT TTTCATTTAACCAAACGTATGGATACCTGACCACATATTTATTCGTCACCCTATTAGGGTCCGCAGGACTTTTTAATGTA ATAAAAAATCAGAAGCAAAATAGAAAAGTTGTAGCTGCTACTGTTGTAATACTTATAATATTAAATATAACATTCTCTAC TTTTTTTGTTCATTACCGTTTAGGGATAGGGGGAGGAAATAGTGAATGGTATATGAGTGAAGAAACATACAATACAGGAG AATGGATAAAAGAAAATATTAGCTGGGATAAAAAGGCAGTATCAAATAGCATGCAGGGTAATCGACTGTTTGCGTCTTAT GGAGGGCAGCCTGTATTATATAGAGATGACATCAGTAATTATATGAATGGATTTGTAACTCTAAATGAGAGTAAAATAGA GAAAAAGTCACCATTTTCAAAGAGTTTTTATCTAGACAATCCTTATGTTTTAAAATCAGGAACAACTACATCAGGCTTGT ATAGCTGGATTTCTCAATATCCGATCACTAGTGAAAACTCCCAGAACTTTATAAATGGGAATAATATTTCTTATTTCTAT GATGATAGTCTAAATTATAATCGTCTGTTTGGCTCATTACCCCAAAGTAAAAATTCAATTTATAACAGTGGAAGAATGCG GATATGGGAGAATTAA
Upstream 100 bases:
>100_bases AGGAAAAAACATCTTGAGATCGGAAGATATTATGCAGGAAAATTCAAGTTCAAACTCTGATGTTCAATACAATCCAAGTA GAAGAACCAAATTTCTGCTA
Downstream 100 bases:
>100_bases ACTTACGGATGTTTAAAAATGAACTTAATATATTATTATCCAATGGAAAAAGGAGCACCAGCTGAAGTTGGAAGGAATAT ACTCAAAAAGCTACTTGATC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 511; Mature: 510
Protein sequence:
>511_residues MGLLVILNIVMRIPSIPHEKGYDSFFIHSLANSVANFGVAQWWINWMSVFGLYPYSYASAVPFTLSGMSQLTGIRMEIVI LLFCVLLGLFSIFASYSLATVLYDNFLHRFLFAVIFSSSAGTLNLTTWEITTRAQILVFFPFLLYLLFQIIKFKTKFVML FIVTALLLLATHHFVYMGLFYSGLIFIVALIYKLNRNQPFQIQKTQLRNINLNYMYISSVFFLIILIFLYGSKWGLITSG SRYAWIIDILMITGRNVGLTLLLSIGALIYYIFKKDKLLDEWAILICLIPTLIFSFNQTYGYLTTYLFVTLLGSAGLFNV IKNQKQNRKVVAATVVILIILNITFSTFFVHYRLGIGGGNSEWYMSEETYNTGEWIKENISWDKKAVSNSMQGNRLFASY GGQPVLYRDDISNYMNGFVTLNESKIEKKSPFSKSFYLDNPYVLKSGTTTSGLYSWISQYPITSENSQNFINGNNISYFY DDSLNYNRLFGSLPQSKNSIYNSGRMRIWEN
Sequences:
>Translated_511_residues MGLLVILNIVMRIPSIPHEKGYDSFFIHSLANSVANFGVAQWWINWMSVFGLYPYSYASAVPFTLSGMSQLTGIRMEIVI LLFCVLLGLFSIFASYSLATVLYDNFLHRFLFAVIFSSSAGTLNLTTWEITTRAQILVFFPFLLYLLFQIIKFKTKFVML FIVTALLLLATHHFVYMGLFYSGLIFIVALIYKLNRNQPFQIQKTQLRNINLNYMYISSVFFLIILIFLYGSKWGLITSG SRYAWIIDILMITGRNVGLTLLLSIGALIYYIFKKDKLLDEWAILICLIPTLIFSFNQTYGYLTTYLFVTLLGSAGLFNV IKNQKQNRKVVAATVVILIILNITFSTFFVHYRLGIGGGNSEWYMSEETYNTGEWIKENISWDKKAVSNSMQGNRLFASY GGQPVLYRDDISNYMNGFVTLNESKIEKKSPFSKSFYLDNPYVLKSGTTTSGLYSWISQYPITSENSQNFINGNNISYFY DDSLNYNRLFGSLPQSKNSIYNSGRMRIWEN >Mature_510_residues GLLVILNIVMRIPSIPHEKGYDSFFIHSLANSVANFGVAQWWINWMSVFGLYPYSYASAVPFTLSGMSQLTGIRMEIVIL LFCVLLGLFSIFASYSLATVLYDNFLHRFLFAVIFSSSAGTLNLTTWEITTRAQILVFFPFLLYLLFQIIKFKTKFVMLF IVTALLLLATHHFVYMGLFYSGLIFIVALIYKLNRNQPFQIQKTQLRNINLNYMYISSVFFLIILIFLYGSKWGLITSGS RYAWIIDILMITGRNVGLTLLLSIGALIYYIFKKDKLLDEWAILICLIPTLIFSFNQTYGYLTTYLFVTLLGSAGLFNVI KNQKQNRKVVAATVVILIILNITFSTFFVHYRLGIGGGNSEWYMSEETYNTGEWIKENISWDKKAVSNSMQGNRLFASYG GQPVLYRDDISNYMNGFVTLNESKIEKKSPFSKSFYLDNPYVLKSGTTTSGLYSWISQYPITSENSQNFINGNNISYFYD DSLNYNRLFGSLPQSKNSIYNSGRMRIWEN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 58667; Mature: 58536
Theoretical pI: Translated: 9.66; Mature: 9.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLLVILNIVMRIPSIPHEKGYDSFFIHSLANSVANFGVAQWWINWMSVFGLYPYSYASA CHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC VPFTLSGMSQLTGIRMEIVILLFCVLLGLFSIFASYSLATVLYDNFLHRFLFAVIFSSSA CCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GTLNLTTWEITTRAQILVFFPFLLYLLFQIIKFKTKFVMLFIVTALLLLATHHFVYMGLF CEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YSGLIFIVALIYKLNRNQPFQIQKTQLRNINLNYMYISSVFFLIILIFLYGSKWGLITSG HHHHHHHHHHHHHHCCCCCCEEEHHHHHCCCCEEEHHHHHHHHHHHHHHHCCCCCEEECC SRYAWIIDILMITGRNVGLTLLLSIGALIYYIFKKDKLLDEWAILICLIPTLIFSFNQTY CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH GYLTTYLFVTLLGSAGLFNVIKNQKQNRKVVAATVVILIILNITFSTFFVHYRLGIGGGN HHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCC SEWYMSEETYNTGEWIKENISWDKKAVSNSMQGNRLFASYGGQPVLYRDDISNYMNGFVT CCEEECCCCCCCHHHHHHHCCHHHHHHHCCCCCCEEEECCCCCEEEEHHHHHHHCCCEEE LNESKIEKKSPFSKSFYLDNPYVLKSGTTTSGLYSWISQYPITSENSQNFINGNNISYFY ECHHHCCCCCCCCCCEECCCCEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEE DDSLNYNRLFGSLPQSKNSIYNSGRMRIWEN CCCCCHHHHHCCCCCCHHHHHCCCCEEEECC >Mature Secondary Structure GLLVILNIVMRIPSIPHEKGYDSFFIHSLANSVANFGVAQWWINWMSVFGLYPYSYASA HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC VPFTLSGMSQLTGIRMEIVILLFCVLLGLFSIFASYSLATVLYDNFLHRFLFAVIFSSSA CCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GTLNLTTWEITTRAQILVFFPFLLYLLFQIIKFKTKFVMLFIVTALLLLATHHFVYMGLF CEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YSGLIFIVALIYKLNRNQPFQIQKTQLRNINLNYMYISSVFFLIILIFLYGSKWGLITSG HHHHHHHHHHHHHHCCCCCCEEEHHHHHCCCCEEEHHHHHHHHHHHHHHHCCCCCEEECC SRYAWIIDILMITGRNVGLTLLLSIGALIYYIFKKDKLLDEWAILICLIPTLIFSFNQTY CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH GYLTTYLFVTLLGSAGLFNVIKNQKQNRKVVAATVVILIILNITFSTFFVHYRLGIGGGN HHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCC SEWYMSEETYNTGEWIKENISWDKKAVSNSMQGNRLFASYGGQPVLYRDDISNYMNGFVT CCEEECCCCCCCHHHHHHHCCHHHHHHHCCCCCCEEEECCCCCEEEEHHHHHHHCCCEEE LNESKIEKKSPFSKSFYLDNPYVLKSGTTTSGLYSWISQYPITSENSQNFINGNNISYFY ECHHHCCCCCCCCCCEECCCCEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEE DDSLNYNRLFGSLPQSKNSIYNSGRMRIWEN CCCCCHHHHHCCCCCCHHHHHCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA