| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
Click here to switch to the map view.
The map label for this gene is 21228119
Identifier: 21228119
GI number: 21228119
Start: 2407322
End: 2408461
Strand: Reverse
Name: 21228119
Synonym: MM_2017
Alternate gene names: NA
Gene position: 2408461-2407322 (Counterclockwise)
Preceding gene: 21228125
Following gene: 21228118
Centisome position: 58.8
GC content: 42.11
Gene sequence:
>1140_bases ATGAAGCAAGACCTTTTAGAACTCCTTATTGATATTTTCAAATCATCCGGATACAATGTCATAATATCCAGCCAGTATGA CATCCTTGTGGAGAAAAACGGACATAAGGCTTATGTCATGTGTGCCCTGAGTCCAGATTACGAAGAAATAAAATCTTTTT CTGAAAAGATAAAGGGTTGCACTGGAATTTATGTCATAACCCAGAAGACTTCAGGAGAACTTGATGATTACGCAGCCGAG CTAGGGATATACATATGGGACAGGGATGAACTGGCTCTCCAGATCGGAAGGGCGGTTCTGACAAATATGGAAAGAAAATC AAGGAACTGTCAAACAGAATCTGAATTGCCCTCCAGGGAATGCCAGAATAATGTAAGTCCTACCTCTGAATCTGCCAGAG ATAACTGGAAAGAAAGCTTCGAACAGGAGCCCTGTTCAGGCGGGGGACTTGTACCTCTACAGGAACTATCAGGGGGAACA GAAAGAGTCTCTTTTGCGTCAAGGATCCGGCCTCCGGTTCAGGAGAGGAAACCCTTAAAGAGAATAGAGGACGATGAAAC TCCGGGGACTGAAGAGTATGAGACGCTGAATATCCAGTCCGTAGAACCCAGGATTCCTAAAGATCAGGCTATTATTATTG CAAAACCCTATCTTATCGGCCCTAAAGATGCGATCTTAAAATTCGTTCCCTTCTGGATGTATTCTTACAGCGTGGAAGCA GAAAAACGGTTCAGGTCAAAGGTTGTAAATATTACAGGGGAAGGAAAAGGTTTTCTTAATGCACTGAACAAGTCAAAAGA AAATATGGATATAGAAGGGCTTGGGACACCCACCAGAATTCCGGCAGTGCAGTATGAGGTAAAAAGGCCGAATGTAGATA AAAAGCAGGCAGAGAAGATTCTTCTTGATTTTATTATACAGGAAAATACACGTGAGATGCGCTTTAATAACCTCGAAGGG CAGGCAGTTATCTATGAGCAAAAGAATATTAGCCCGAGAGCTGATGAAGTCGAACTTAATATGGATCTTGTTTATGTTCC AGTATGGGAAGTAAAGGGAAAAAGAAATTCTCTTGAAATTAACGCTTATAATGCCAGCATTCTCGAAGAGCCTGTGGATG AAGATGCCGAGTTTGTGTAA
Upstream 100 bases:
>100_bases CGGAGAAAGAAGCATACGGTATAATAAGTTTTAAGATAATTATATTTTAATTGTAAACATAAACTATTTTAGCTGTGCAG GACATAAGAAAGTGAGAATC
Downstream 100 bases:
>100_bases AGGAATTCCCTGAAAAAATATCAGAAGAAAAATATATAATATAGAAAATATATTTACATATTGGAGAAAAAAGGGCTTTC ATTAAAAGATCCTCATCTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 379; Mature: 379
Protein sequence:
>379_residues MKQDLLELLIDIFKSSGYNVIISSQYDILVEKNGHKAYVMCALSPDYEEIKSFSEKIKGCTGIYVITQKTSGELDDYAAE LGIYIWDRDELALQIGRAVLTNMERKSRNCQTESELPSRECQNNVSPTSESARDNWKESFEQEPCSGGGLVPLQELSGGT ERVSFASRIRPPVQERKPLKRIEDDETPGTEEYETLNIQSVEPRIPKDQAIIIAKPYLIGPKDAILKFVPFWMYSYSVEA EKRFRSKVVNITGEGKGFLNALNKSKENMDIEGLGTPTRIPAVQYEVKRPNVDKKQAEKILLDFIIQENTREMRFNNLEG QAVIYEQKNISPRADEVELNMDLVYVPVWEVKGKRNSLEINAYNASILEEPVDEDAEFV
Sequences:
>Translated_379_residues MKQDLLELLIDIFKSSGYNVIISSQYDILVEKNGHKAYVMCALSPDYEEIKSFSEKIKGCTGIYVITQKTSGELDDYAAE LGIYIWDRDELALQIGRAVLTNMERKSRNCQTESELPSRECQNNVSPTSESARDNWKESFEQEPCSGGGLVPLQELSGGT ERVSFASRIRPPVQERKPLKRIEDDETPGTEEYETLNIQSVEPRIPKDQAIIIAKPYLIGPKDAILKFVPFWMYSYSVEA EKRFRSKVVNITGEGKGFLNALNKSKENMDIEGLGTPTRIPAVQYEVKRPNVDKKQAEKILLDFIIQENTREMRFNNLEG QAVIYEQKNISPRADEVELNMDLVYVPVWEVKGKRNSLEINAYNASILEEPVDEDAEFV >Mature_379_residues MKQDLLELLIDIFKSSGYNVIISSQYDILVEKNGHKAYVMCALSPDYEEIKSFSEKIKGCTGIYVITQKTSGELDDYAAE LGIYIWDRDELALQIGRAVLTNMERKSRNCQTESELPSRECQNNVSPTSESARDNWKESFEQEPCSGGGLVPLQELSGGT ERVSFASRIRPPVQERKPLKRIEDDETPGTEEYETLNIQSVEPRIPKDQAIIIAKPYLIGPKDAILKFVPFWMYSYSVEA EKRFRSKVVNITGEGKGFLNALNKSKENMDIEGLGTPTRIPAVQYEVKRPNVDKKQAEKILLDFIIQENTREMRFNNLEG QAVIYEQKNISPRADEVELNMDLVYVPVWEVKGKRNSLEINAYNASILEEPVDEDAEFV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43139; Mature: 43139
Theoretical pI: Translated: 4.56; Mature: 4.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQDLLELLIDIFKSSGYNVIISSQYDILVEKNGHKAYVMCALSPDYEEIKSFSEKIKGC CCHHHHHHHHHHHHCCCCEEEEECCEEEEEEECCCEEEEEEEECCCHHHHHHHHHHHCCC TGIYVITQKTSGELDDYAAELGIYIWDRDELALQIGRAVLTNMERKSRNCQTESELPSRE EEEEEEEECCCCCHHHHHHHCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHH CQNNVSPTSESARDNWKESFEQEPCSGGGLVPLQELSGGTERVSFASRIRPPVQERKPLK HHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCHHHHHHHHHCCCCHHHCCHHH RIEDDETPGTEEYETLNIQSVEPRIPKDQAIIIAKPYLIGPKDAILKFVPFWMYSYSVEA HCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCEEECCHHHHHHHHHHHHHEECCHH EKRFRSKVVNITGEGKGFLNALNKSKENMDIEGLGTPTRIPAVQYEVKRPNVDKKQAEKI HHHHHHHEEEEECCCCHHHHHHHCCCCCCCEECCCCCCCCCEEEEEECCCCCCHHHHHHH LLDFIIQENTREMRFNNLEGQAVIYEQKNISPRADEVELNMDLVYVPVWEVKGKRNSLEI HHHHHHCCCCHHHHCCCCCCCEEEEECCCCCCCCCEEEEEEEEEEEEEEEECCCCCEEEE NAYNASILEEPVDEDAEFV EECCHHHHHCCCCCCCCCC >Mature Secondary Structure MKQDLLELLIDIFKSSGYNVIISSQYDILVEKNGHKAYVMCALSPDYEEIKSFSEKIKGC CCHHHHHHHHHHHHCCCCEEEEECCEEEEEEECCCEEEEEEEECCCHHHHHHHHHHHCCC TGIYVITQKTSGELDDYAAELGIYIWDRDELALQIGRAVLTNMERKSRNCQTESELPSRE EEEEEEEECCCCCHHHHHHHCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHH CQNNVSPTSESARDNWKESFEQEPCSGGGLVPLQELSGGTERVSFASRIRPPVQERKPLK HHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCHHHHHHHHHCCCCHHHCCHHH RIEDDETPGTEEYETLNIQSVEPRIPKDQAIIIAKPYLIGPKDAILKFVPFWMYSYSVEA HCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCEEECCHHHHHHHHHHHHHEECCHH EKRFRSKVVNITGEGKGFLNALNKSKENMDIEGLGTPTRIPAVQYEVKRPNVDKKQAEKI HHHHHHHEEEEECCCCHHHHHHHCCCCCCCEECCCCCCCCCEEEEEECCCCCCHHHHHHH LLDFIIQENTREMRFNNLEGQAVIYEQKNISPRADEVELNMDLVYVPVWEVKGKRNSLEI HHHHHHCCCCHHHHCCCCCCCEEEEECCCCCCCCCEEEEEEEEEEEEEEEECCCCCEEEE NAYNASILEEPVDEDAEFV EECCHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA