| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21228073
Identifier: 21228073
GI number: 21228073
Start: 2341279
End: 2341821
Strand: Reverse
Name: 21228073
Synonym: MM_1971
Alternate gene names: NA
Gene position: 2341821-2341279 (Counterclockwise)
Preceding gene: 21228074
Following gene: 21228072
Centisome position: 57.17
GC content: 44.38
Gene sequence:
>543_bases GTGACCGAATTCGAACGTGTGCTTGTAAACTCATTTAACGCATACATTGAGGAAAAAGGCATAAGAGCCATCTCTTACAG GCTTAAACAGCACAGGTTTACATCTCAGTTCCTTGACGTACTTGTAGATTCCCTTGACCCTGACCTTTATATGGGTATAG AATGCAAAAGTATCTCAGTAGATAAAGGAGCAACTGCGCTTTACTTTTCCCAGCATTTTACAGTGGACAAAAAAGGCATT CATCAGATAGACAGAATTTCAGACTACCTTAACAGGTCTGGAAGAAGGGGCTTTCTGGCAGTGGAACTCCGCCTCGGAGC GGGACATGGAAGGGAAGCGTATATGGTCCCCTGGGAAGATCTGGAGAAGAGCTACAATTCGGAAAGTCCCAAGCTCACAC TTCAGGAAATACGAAACTTTCCGGAAATAAGAAGGGATGGAAAAGATTACATAATAAACCCGAAAGAATGGGGGAGAAAG AGCCGCTGGGAGAAAGATATTAAACCGAAGCCAGCAGAGAATTCCGGAGAAACCGATGACTGA
Upstream 100 bases:
>100_bases AAATATTAAAAGAAAAGTTATCCTGTAAAACAACCCGTATAAACTTTTATTATTAAGGTACAGATCTAGCAAATAAGATT AAAGCAGGAGAATGGATTTT
Downstream 100 bases:
>100_bases AATCATAGAAATATTCAGAAAAGAAGCAGGCAGATGTGCCGAAAAAATCAAAAAACATAGATCTGTACATGTAGTATCCC ATATAGATGCAGACGGACTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 180; Mature: 179
Protein sequence:
>180_residues MTEFERVLVNSFNAYIEEKGIRAISYRLKQHRFTSQFLDVLVDSLDPDLYMGIECKSISVDKGATALYFSQHFTVDKKGI HQIDRISDYLNRSGRRGFLAVELRLGAGHGREAYMVPWEDLEKSYNSESPKLTLQEIRNFPEIRRDGKDYIINPKEWGRK SRWEKDIKPKPAENSGETDD
Sequences:
>Translated_180_residues MTEFERVLVNSFNAYIEEKGIRAISYRLKQHRFTSQFLDVLVDSLDPDLYMGIECKSISVDKGATALYFSQHFTVDKKGI HQIDRISDYLNRSGRRGFLAVELRLGAGHGREAYMVPWEDLEKSYNSESPKLTLQEIRNFPEIRRDGKDYIINPKEWGRK SRWEKDIKPKPAENSGETDD >Mature_179_residues TEFERVLVNSFNAYIEEKGIRAISYRLKQHRFTSQFLDVLVDSLDPDLYMGIECKSISVDKGATALYFSQHFTVDKKGIH QIDRISDYLNRSGRRGFLAVELRLGAGHGREAYMVPWEDLEKSYNSESPKLTLQEIRNFPEIRRDGKDYIINPKEWGRKS RWEKDIKPKPAENSGETDD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20966; Mature: 20835
Theoretical pI: Translated: 6.96; Mature: 6.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEFERVLVNSFNAYIEEKGIRAISYRLKQHRFTSQFLDVLVDSLDPDLYMGIECKSISV CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECEEECEEEC DKGATALYFSQHFTVDKKGIHQIDRISDYLNRSGRRGFLAVELRLGAGHGREAYMVPWED CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEECCHHH LEKSYNSESPKLTLQEIRNFPEIRRDGKDYIINPKEWGRKSRWEKDIKPKPAENSGETDD HHHHCCCCCCCEEHHHHHCCHHHHHCCCCEEECCHHHCCHHCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TEFERVLVNSFNAYIEEKGIRAISYRLKQHRFTSQFLDVLVDSLDPDLYMGIECKSISV CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECEEECEEEC DKGATALYFSQHFTVDKKGIHQIDRISDYLNRSGRRGFLAVELRLGAGHGREAYMVPWED CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEECCHHH LEKSYNSESPKLTLQEIRNFPEIRRDGKDYIINPKEWGRKSRWEKDIKPKPAENSGETDD HHHHCCCCCCCEEHHHHHCCHHHHHCCCCEEECCHHHCCHHCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA