Definition Methanosarcina mazei Go1 chromosome, complete genome.
Accession NC_003901
Length 4,096,345

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The map label for this gene is 21228071

Identifier: 21228071

GI number: 21228071

Start: 2338990

End: 2339748

Strand: Direct

Name: 21228071

Synonym: MM_1969

Alternate gene names: NA

Gene position: 2338990-2339748 (Clockwise)

Preceding gene: 21228070

Following gene: 21228078

Centisome position: 57.1

GC content: 45.85

Gene sequence:

>759_bases
ATGCAAAAAAATGGATACCGTATTCAGTTTACATCATCCAGAATCAGAGATCTCATGTACAGGACCACATTTGATCCTAA
GAAAATGGATGGAGATATTATTCTTAATCTTTCCCTTATTGATAAAAAAGACCTGGACGATGTTCTCGGCATCTTTAAGA
TGGTAATCTCAAGCGGGCTTTCCGTTACTCCCTATGTGAAAGTTATTTCGGAAGGGGAGTCCATAGGAGACATGACCATT
GAGAAGGGAAAGGTAGGAATCGGAACAGTATGCAGCATAACTATTGACGGCGTGCTGCTGAAAGCGGGGATCCCCGTAAA
CCCCAAGCTTGGAGGGGTTGTTCAGATCCGAAATGGAATTCCTGTACGCTTCACTGATGTGCTCACGTATGTAAGTACAA
CCGTTGACCCCCTTGAAATCCTGATGTCTCAGGGAATCACTTCAGTATCTGAAATGCTCAGAACAGGTTCCGGCAAGGTT
CTTGCAAACCTCAGGGAGGCTCCCATGGTTGCAAGGGATGAGATTGAAAGCAACCTGTCTGATCTTCTGGACGCGGGTTT
CAGCGGAATTCTGGAAGTGGGAGAGCCCAATACAAGAGTGCTTGATGTCCCTATTGAGAGGGACCATCTGGGAATAGTCG
TTATTGGTGGGACCAATCCTATGGCTGTTGTGCAGGAGTATGGGATTCCTATAGATACAAGTGCCATGTCGAGGTTAATT
TCTTTTAAGGAGATGAGCCGGATCGAGGATCTGGTCTGA

Upstream 100 bases:

>100_bases
GAAGTCCAATACAGATCGAAAGGGTGCTTTCCTTTCGATAATACCCGATAATACATAACTTATAATAGGTATAAATACCT
TCAATTACTGGAGGGTTGAA

Downstream 100 bases:

>100_bases
AACTCGCGTCTGTTTGAACCTGAATATAATTCCTGTTCCGCAAATTCCTGTTTCAGAAAGTCTTTGCTTCATTGACCTTG
AACTTCTTTTCTGCGGAAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MQKNGYRIQFTSSRIRDLMYRTTFDPKKMDGDIILNLSLIDKKDLDDVLGIFKMVISSGLSVTPYVKVISEGESIGDMTI
EKGKVGIGTVCSITIDGVLLKAGIPVNPKLGGVVQIRNGIPVRFTDVLTYVSTTVDPLEILMSQGITSVSEMLRTGSGKV
LANLREAPMVARDEIESNLSDLLDAGFSGILEVGEPNTRVLDVPIERDHLGIVVIGGTNPMAVVQEYGIPIDTSAMSRLI
SFKEMSRIEDLV

Sequences:

>Translated_252_residues
MQKNGYRIQFTSSRIRDLMYRTTFDPKKMDGDIILNLSLIDKKDLDDVLGIFKMVISSGLSVTPYVKVISEGESIGDMTI
EKGKVGIGTVCSITIDGVLLKAGIPVNPKLGGVVQIRNGIPVRFTDVLTYVSTTVDPLEILMSQGITSVSEMLRTGSGKV
LANLREAPMVARDEIESNLSDLLDAGFSGILEVGEPNTRVLDVPIERDHLGIVVIGGTNPMAVVQEYGIPIDTSAMSRLI
SFKEMSRIEDLV
>Mature_252_residues
MQKNGYRIQFTSSRIRDLMYRTTFDPKKMDGDIILNLSLIDKKDLDDVLGIFKMVISSGLSVTPYVKVISEGESIGDMTI
EKGKVGIGTVCSITIDGVLLKAGIPVNPKLGGVVQIRNGIPVRFTDVLTYVSTTVDPLEILMSQGITSVSEMLRTGSGKV
LANLREAPMVARDEIESNLSDLLDAGFSGILEVGEPNTRVLDVPIERDHLGIVVIGGTNPMAVVQEYGIPIDTSAMSRLI
SFKEMSRIEDLV

Specific function: Unknown

COG id: COG1693

COG function: function code S; Uncharacterized protein conserved in archaea

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002846
- InterPro:   IPR013668
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01995 DUF128; PF08461 HTH_12 [H]

EC number: NA

Molecular weight: Translated: 27375; Mature: 27375

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKNGYRIQFTSSRIRDLMYRTTFDPKKMDGDIILNLSLIDKKDLDDVLGIFKMVISSGL
CCCCCEEEEECHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCC
SVTPYVKVISEGESIGDMTIEKGKVGIGTVCSITIDGVLLKAGIPVNPKLGGVVQIRNGI
CCCHHHHEECCCCCCCCEEEECCCCCCCEEEEEEECCEEEECCCCCCCCCCCEEEECCCC
PVRFTDVLTYVSTTVDPLEILMSQGITSVSEMLRTGSGKVLANLREAPMVARDEIESNLS
CCHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHCCCCCEEHHHHHCCCHHHHHHHHHHH
DLLDAGFSGILEVGEPNTRVLDVPIERDHLGIVVIGGTNPMAVVQEYGIPIDTSAMSRLI
HHHHCCCCCEEECCCCCCEEEECCCCCCCEEEEEECCCCCHHHHHHCCCCCCHHHHHHHH
SFKEMSRIEDLV
HHHHHHHHHHCC
>Mature Secondary Structure
MQKNGYRIQFTSSRIRDLMYRTTFDPKKMDGDIILNLSLIDKKDLDDVLGIFKMVISSGL
CCCCCEEEEECHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCC
SVTPYVKVISEGESIGDMTIEKGKVGIGTVCSITIDGVLLKAGIPVNPKLGGVVQIRNGI
CCCHHHHEECCCCCCCCEEEECCCCCCCEEEEEEECCEEEECCCCCCCCCCCEEEECCCC
PVRFTDVLTYVSTTVDPLEILMSQGITSVSEMLRTGSGKVLANLREAPMVARDEIESNLS
CCHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHCCCCCEEHHHHHCCCHHHHHHHHHHH
DLLDAGFSGILEVGEPNTRVLDVPIERDHLGIVVIGGTNPMAVVQEYGIPIDTSAMSRLI
HHHHCCCCCEEECCCCCCEEEECCCCCCCEEEEEECCCCCHHHHHHCCCCCCHHHHHHHH
SFKEMSRIEDLV
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]