| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21228071
Identifier: 21228071
GI number: 21228071
Start: 2338990
End: 2339748
Strand: Direct
Name: 21228071
Synonym: MM_1969
Alternate gene names: NA
Gene position: 2338990-2339748 (Clockwise)
Preceding gene: 21228070
Following gene: 21228078
Centisome position: 57.1
GC content: 45.85
Gene sequence:
>759_bases ATGCAAAAAAATGGATACCGTATTCAGTTTACATCATCCAGAATCAGAGATCTCATGTACAGGACCACATTTGATCCTAA GAAAATGGATGGAGATATTATTCTTAATCTTTCCCTTATTGATAAAAAAGACCTGGACGATGTTCTCGGCATCTTTAAGA TGGTAATCTCAAGCGGGCTTTCCGTTACTCCCTATGTGAAAGTTATTTCGGAAGGGGAGTCCATAGGAGACATGACCATT GAGAAGGGAAAGGTAGGAATCGGAACAGTATGCAGCATAACTATTGACGGCGTGCTGCTGAAAGCGGGGATCCCCGTAAA CCCCAAGCTTGGAGGGGTTGTTCAGATCCGAAATGGAATTCCTGTACGCTTCACTGATGTGCTCACGTATGTAAGTACAA CCGTTGACCCCCTTGAAATCCTGATGTCTCAGGGAATCACTTCAGTATCTGAAATGCTCAGAACAGGTTCCGGCAAGGTT CTTGCAAACCTCAGGGAGGCTCCCATGGTTGCAAGGGATGAGATTGAAAGCAACCTGTCTGATCTTCTGGACGCGGGTTT CAGCGGAATTCTGGAAGTGGGAGAGCCCAATACAAGAGTGCTTGATGTCCCTATTGAGAGGGACCATCTGGGAATAGTCG TTATTGGTGGGACCAATCCTATGGCTGTTGTGCAGGAGTATGGGATTCCTATAGATACAAGTGCCATGTCGAGGTTAATT TCTTTTAAGGAGATGAGCCGGATCGAGGATCTGGTCTGA
Upstream 100 bases:
>100_bases GAAGTCCAATACAGATCGAAAGGGTGCTTTCCTTTCGATAATACCCGATAATACATAACTTATAATAGGTATAAATACCT TCAATTACTGGAGGGTTGAA
Downstream 100 bases:
>100_bases AACTCGCGTCTGTTTGAACCTGAATATAATTCCTGTTCCGCAAATTCCTGTTTCAGAAAGTCTTTGCTTCATTGACCTTG AACTTCTTTTCTGCGGAAAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 252; Mature: 252
Protein sequence:
>252_residues MQKNGYRIQFTSSRIRDLMYRTTFDPKKMDGDIILNLSLIDKKDLDDVLGIFKMVISSGLSVTPYVKVISEGESIGDMTI EKGKVGIGTVCSITIDGVLLKAGIPVNPKLGGVVQIRNGIPVRFTDVLTYVSTTVDPLEILMSQGITSVSEMLRTGSGKV LANLREAPMVARDEIESNLSDLLDAGFSGILEVGEPNTRVLDVPIERDHLGIVVIGGTNPMAVVQEYGIPIDTSAMSRLI SFKEMSRIEDLV
Sequences:
>Translated_252_residues MQKNGYRIQFTSSRIRDLMYRTTFDPKKMDGDIILNLSLIDKKDLDDVLGIFKMVISSGLSVTPYVKVISEGESIGDMTI EKGKVGIGTVCSITIDGVLLKAGIPVNPKLGGVVQIRNGIPVRFTDVLTYVSTTVDPLEILMSQGITSVSEMLRTGSGKV LANLREAPMVARDEIESNLSDLLDAGFSGILEVGEPNTRVLDVPIERDHLGIVVIGGTNPMAVVQEYGIPIDTSAMSRLI SFKEMSRIEDLV >Mature_252_residues MQKNGYRIQFTSSRIRDLMYRTTFDPKKMDGDIILNLSLIDKKDLDDVLGIFKMVISSGLSVTPYVKVISEGESIGDMTI EKGKVGIGTVCSITIDGVLLKAGIPVNPKLGGVVQIRNGIPVRFTDVLTYVSTTVDPLEILMSQGITSVSEMLRTGSGKV LANLREAPMVARDEIESNLSDLLDAGFSGILEVGEPNTRVLDVPIERDHLGIVVIGGTNPMAVVQEYGIPIDTSAMSRLI SFKEMSRIEDLV
Specific function: Unknown
COG id: COG1693
COG function: function code S; Uncharacterized protein conserved in archaea
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002846 - InterPro: IPR013668 - InterPro: IPR011991 [H]
Pfam domain/function: PF01995 DUF128; PF08461 HTH_12 [H]
EC number: NA
Molecular weight: Translated: 27375; Mature: 27375
Theoretical pI: Translated: 4.65; Mature: 4.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQKNGYRIQFTSSRIRDLMYRTTFDPKKMDGDIILNLSLIDKKDLDDVLGIFKMVISSGL CCCCCEEEEECHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCC SVTPYVKVISEGESIGDMTIEKGKVGIGTVCSITIDGVLLKAGIPVNPKLGGVVQIRNGI CCCHHHHEECCCCCCCCEEEECCCCCCCEEEEEEECCEEEECCCCCCCCCCCEEEECCCC PVRFTDVLTYVSTTVDPLEILMSQGITSVSEMLRTGSGKVLANLREAPMVARDEIESNLS CCHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHCCCCCEEHHHHHCCCHHHHHHHHHHH DLLDAGFSGILEVGEPNTRVLDVPIERDHLGIVVIGGTNPMAVVQEYGIPIDTSAMSRLI HHHHCCCCCEEECCCCCCEEEECCCCCCCEEEEEECCCCCHHHHHHCCCCCCHHHHHHHH SFKEMSRIEDLV HHHHHHHHHHCC >Mature Secondary Structure MQKNGYRIQFTSSRIRDLMYRTTFDPKKMDGDIILNLSLIDKKDLDDVLGIFKMVISSGL CCCCCEEEEECHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCC SVTPYVKVISEGESIGDMTIEKGKVGIGTVCSITIDGVLLKAGIPVNPKLGGVVQIRNGI CCCHHHHEECCCCCCCCEEEECCCCCCCEEEEEEECCEEEECCCCCCCCCCCEEEECCCC PVRFTDVLTYVSTTVDPLEILMSQGITSVSEMLRTGSGKVLANLREAPMVARDEIESNLS CCHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHCCCCCEEHHHHHCCCHHHHHHHHHHH DLLDAGFSGILEVGEPNTRVLDVPIERDHLGIVVIGGTNPMAVVQEYGIPIDTSAMSRLI HHHHCCCCCEEECCCCCCEEEECCCCCCCEEEEEECCCCCHHHHHHCCCCCCHHHHHHHH SFKEMSRIEDLV HHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]