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The map label for this gene is vdcB [C]

Identifier: 21227973

GI number: 21227973

Start: 2224583

End: 2225167

Strand: Reverse

Name: vdcB [C]

Synonym: MM_1871

Alternate gene names: 21227973

Gene position: 2225167-2224583 (Counterclockwise)

Preceding gene: 21227974

Following gene: 21227970

Centisome position: 54.32

GC content: 47.18

Gene sequence:

>585_bases
ATGGAAATAATTGTAGGCATCAGCGGAGCTTCAGGGGTCCAGTACGGGATCCGCCTTCTTGAAGTGCTGGCAAATAAAGG
GATTAAAACCCATCTTGTACTGACCGAAGCTGCAAAACAGATAATCGAGATCGAGACTGATTACCTGCCTGTTGAAGTGG
AAAAGCTGGCAACCTGGAATTATTCCCAGAAGAACTTTTCAGCTCCTATAGCCAGCGGCTCTTACAAAACTTCGGGAATG
ATCATTGCCCCGTGCAGCATGAAAACCCTTGGGGCGGTTGCAAACGGGATATCTGATTCCCTGATAACAAGGGCTGCAGA
TGTTTGCCTCAAAGAGGAGAGAAAACTGATCCTCATGACAAGAGAAACTCCCCTGAACCTTATACACCTTGAGAACATGC
TGAAAGCCAGAAAGGCAGGAGCAAGCATCCTTCCTGCATGCCCGGGATTTTATTCCAGACCAAAGACTCTTGATGACATT
ATAGACACCATGGCTGGCAGGGCTCTTGACCTCCTGGGAATAGAAAATGACATTTACCAGCGCTGGAGACAGGAAAAAAC
CGAGGATTTGGAGAACAACGGATAA

Upstream 100 bases:

>100_bases
TGGAAGAGATAAAAGAGATAGTTTCAACCGCAGAGGAAATGGTCGGAAACTTCATTGCCTCCTGTGAAAAAAGTGACGTT
ACAGCAAGGAGAAACAAATA

Downstream 100 bases:

>100_bases
ATGCCGGAAATCAGAGAATTCATCAAGTAAAAAAGATAATCCGGACAATTAAGCGGGGAATATAAAATTCTGATCCTGGT
TGAGAAGTTGAAATACAGCC

Product: vanillate decarboxylase protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MEIIVGISGASGVQYGIRLLEVLANKGIKTHLVLTEAAKQIIEIETDYLPVEVEKLATWNYSQKNFSAPIASGSYKTSGM
IIAPCSMKTLGAVANGISDSLITRAADVCLKEERKLILMTRETPLNLIHLENMLKARKAGASILPACPGFYSRPKTLDDI
IDTMAGRALDLLGIENDIYQRWRQEKTEDLENNG

Sequences:

>Translated_194_residues
MEIIVGISGASGVQYGIRLLEVLANKGIKTHLVLTEAAKQIIEIETDYLPVEVEKLATWNYSQKNFSAPIASGSYKTSGM
IIAPCSMKTLGAVANGISDSLITRAADVCLKEERKLILMTRETPLNLIHLENMLKARKAGASILPACPGFYSRPKTLDDI
IDTMAGRALDLLGIENDIYQRWRQEKTEDLENNG
>Mature_194_residues
MEIIVGISGASGVQYGIRLLEVLANKGIKTHLVLTEAAKQIIEIETDYLPVEVEKLATWNYSQKNFSAPIASGSYKTSGM
IIAPCSMKTLGAVANGISDSLITRAADVCLKEERKLILMTRETPLNLIHLENMLKARKAGASILPACPGFYSRPKTLDDI
IDTMAGRALDLLGIENDIYQRWRQEKTEDLENNG

Specific function: Unknown

COG id: COG0163

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polyprenyl p-hydroxybenzoate / phenylacrylic acid decarboxylases family [H]

Homologues:

Organism=Escherichia coli, GI1788650, Length=185, Percent_Identity=48.6486486486487, Blast_Score=187, Evalue=5e-49,
Organism=Saccharomyces cerevisiae, GI6320746, Length=187, Percent_Identity=50.2673796791444, Blast_Score=197, Evalue=7e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003382
- InterPro:   IPR004507 [H]

Pfam domain/function: PF02441 Flavoprotein [H]

EC number: 4.1.1.-

Molecular weight: Translated: 21309; Mature: 21309

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIIVGISGASGVQYGIRLLEVLANKGIKTHLVLTEAAKQIIEIETDYLPVEVEKLATWN
CEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCCCCEEHHHHHCCC
YSQKNFSAPIASGSYKTSGMIIAPCSMKTLGAVANGISDSLITRAADVCLKEERKLILMT
CCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHHCCCEEEEEE
RETPLNLIHLENMLKARKAGASILPACPGFYSRPKTLDDIIDTMAGRALDLLGIENDIYQ
CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCCCHHHHH
RWRQEKTEDLENNG
HHHHHHHHHHCCCC
>Mature Secondary Structure
MEIIVGISGASGVQYGIRLLEVLANKGIKTHLVLTEAAKQIIEIETDYLPVEVEKLATWN
CEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCCCCEEHHHHHCCC
YSQKNFSAPIASGSYKTSGMIIAPCSMKTLGAVANGISDSLITRAADVCLKEERKLILMT
CCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHHCCCEEEEEE
RETPLNLIHLENMLKARKAGASILPACPGFYSRPKTLDDIIDTMAGRALDLLGIENDIYQ
CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCCCHHHHH
RWRQEKTEDLENNG
HHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Carbon-Carbon Lyases; Carboxy-Lyases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]