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The map label for this gene is 21227690

Identifier: 21227690

GI number: 21227690

Start: 1888827

End: 1890782

Strand: Reverse

Name: 21227690

Synonym: MM_1588

Alternate gene names: NA

Gene position: 1890782-1888827 (Counterclockwise)

Preceding gene: 21227691

Following gene: 21227687

Centisome position: 46.16

GC content: 43.97

Gene sequence:

>1956_bases
GTGGATGGAGGAATTGGAATTAAAAATAAAGTGCTAATTTTACTGGGAATTTTTCTTATTTTATCATTAATTTCAGGTAT
TGGGTCAGCTGCTGAGATAATTGTCCAGCCGGGAGACTCAATACAGGCTGCAATAGACAGTTCAAAATCAGGCGACACAA
TAACCATAAAACCCGGGACCTACACTGAAAATGTCAACATAACCAAAAGCAGCCTTTTGATAAGATCAGAGTCCGGCAAC
CCTGATGAAACAATAATCAAAGCTAAAAGCTCATCAAGCAATGCGCTCTCAATGCAGGCATGGAATGTTACGATTAAAGG
GATAAAAACCATAGGAGCAAGCGGTTCCAGCTATTCTGGAATTTATATGTACAAATGCAATCAATGTGTGATTGAGAATA
ATAAAATGATGAATAACGGATATGGGATCCGTATCGTAAGCTCCAACAGATGCACCGTCTCGAAAAATACAGTTCTGAAT
AACGGAGTTTACGGGATTTACCTCGGGAGCTGTAGCAACAACACTATTTCCGGAAATACGGCAACCAATGACAACCGCGG
CATCCACGTAGGGTCCGCTGATGACAATACAATTTCAGACAACACTGTGACTTCAAACAATATTTTAGGAATGTATGTCT
GCGGGCTCAGCGACAGGAACCTCATTTATAACAACTATTTCAATAACACAAATATAACCATTAAAAACGGAACAGGGAAT
GCCTATAACACCGCAAAAGCCTCAGGTAAAAACATTGTCGGCGGAACCTACATTGGCGGAAACTTCTGGGGCAAACCTGA
TGGTTCAGGCTTTTCCAATAAGGCAACGGACACGGACAGAGATGGGATTTCCGATTCAGCATACAGTATTCCGGGCAGCA
TATACATAGATCACCTGCCTCTAGTTGTCCCTGCCCCTCTAACAGCTCCTGGCGCAAGTTTCAGCAGCAATGTTACCTCA
GGGACTGCACCTCTCAACGTCCTGTTTACTGACACAAGTACAGGTTCACCAACGGCGTGGAACTGGAACTTCGGAGACGG
AACCAGTTCAACTCAGAAGAACCCAGCACATGTGTATTCGACGGCAGGAACCTATACAGTGACACTTACAGCAAGCAATT
CGGCAGGCAGCAATACGGCAACAAAAACAAATTACGTAACAGTAACCACAGGAACCACAGGAACAAAACCGGTATTACAA
TACTGGGGATCTCCGAGGTCGGGAACTGCACCACTGACTGTAACATTCAAGGACAATTCTTCAGGGTCGCCAACAGCATG
GAACTGGAGTTTCGGAGATGGAGCATATTCAAACGAGAAATATCCAAAACATACGTATATGGCACCAGGGAGTTACACGA
TATCACTTACAGCGAGCAATGCTGCAGGAAGTAATACGTTAACAAAGAGCAATTATATAGTGGTGACAGGAACTTCTTCT
CAAACACCGGTTGCTGCATTTTCCGCATCTCCAACAGCCGGGACTGCACCATTGAGTGTAAGTTTTACTGACAGCAGCAC
GGGTTCGCCAACAACATGGAAATGGAACTTCGGAGATGGAACCAGTTCAACCGAGAAAAATCCTGTGCATACATATTCGA
CAGCGGGAAGCTACACAGTAACGCTTACAGCAAGCAATACAGCAGGCAGTAATACGGCAACGAAATCAAGTTATGTAACA
GTAACTACAGGAACCACAGGAACAAAACCGGTATTACAATACTGGGGGTCTCCAAGGTCGGGAACTGCGCCGCTGACTGT
AACATTTAAGGACAATTCTTCAGGATCTCCGACGGCATGGAACTGGAGTTTTGGAGATGGAGCATATTCAAACGAGAAAT
ATCCAAAACATACGTATATGGCACCAGGAAGTTACACGATATCACTTACAGCCAGTAATGCAGCAGGAAGTAACACATTA
ATAAAGAACAACTATATAGTGGTGACAAATGCCTGA

Upstream 100 bases:

>100_bases
TTTTACATCTGTACATTATTTTCATGTTGAGTACAGTTTTCGTGAATTACTAACAATACAAATTTACCCCCTGATAGGGA
TTTCACCCTAACTTTCTTGA

Downstream 100 bases:

>100_bases
AAATTCTTGGAAATCAGTTTTAAGAGAAAAAGATAAAATCAGGTAAAAAAAGAAAAAACAAAATGACGAGAAAAACAAAA
ATAACAAGAAAATAAGAGAA

Product: surface layer protein B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 651; Mature: 651

Protein sequence:

>651_residues
MDGGIGIKNKVLILLGIFLILSLISGIGSAAEIIVQPGDSIQAAIDSSKSGDTITIKPGTYTENVNITKSSLLIRSESGN
PDETIIKAKSSSSNALSMQAWNVTIKGIKTIGASGSSYSGIYMYKCNQCVIENNKMMNNGYGIRIVSSNRCTVSKNTVLN
NGVYGIYLGSCSNNTISGNTATNDNRGIHVGSADDNTISDNTVTSNNILGMYVCGLSDRNLIYNNYFNNTNITIKNGTGN
AYNTAKASGKNIVGGTYIGGNFWGKPDGSGFSNKATDTDRDGISDSAYSIPGSIYIDHLPLVVPAPLTAPGASFSSNVTS
GTAPLNVLFTDTSTGSPTAWNWNFGDGTSSTQKNPAHVYSTAGTYTVTLTASNSAGSNTATKTNYVTVTTGTTGTKPVLQ
YWGSPRSGTAPLTVTFKDNSSGSPTAWNWSFGDGAYSNEKYPKHTYMAPGSYTISLTASNAAGSNTLTKSNYIVVTGTSS
QTPVAAFSASPTAGTAPLSVSFTDSSTGSPTTWKWNFGDGTSSTEKNPVHTYSTAGSYTVTLTASNTAGSNTATKSSYVT
VTTGTTGTKPVLQYWGSPRSGTAPLTVTFKDNSSGSPTAWNWSFGDGAYSNEKYPKHTYMAPGSYTISLTASNAAGSNTL
IKNNYIVVTNA

Sequences:

>Translated_651_residues
MDGGIGIKNKVLILLGIFLILSLISGIGSAAEIIVQPGDSIQAAIDSSKSGDTITIKPGTYTENVNITKSSLLIRSESGN
PDETIIKAKSSSSNALSMQAWNVTIKGIKTIGASGSSYSGIYMYKCNQCVIENNKMMNNGYGIRIVSSNRCTVSKNTVLN
NGVYGIYLGSCSNNTISGNTATNDNRGIHVGSADDNTISDNTVTSNNILGMYVCGLSDRNLIYNNYFNNTNITIKNGTGN
AYNTAKASGKNIVGGTYIGGNFWGKPDGSGFSNKATDTDRDGISDSAYSIPGSIYIDHLPLVVPAPLTAPGASFSSNVTS
GTAPLNVLFTDTSTGSPTAWNWNFGDGTSSTQKNPAHVYSTAGTYTVTLTASNSAGSNTATKTNYVTVTTGTTGTKPVLQ
YWGSPRSGTAPLTVTFKDNSSGSPTAWNWSFGDGAYSNEKYPKHTYMAPGSYTISLTASNAAGSNTLTKSNYIVVTGTSS
QTPVAAFSASPTAGTAPLSVSFTDSSTGSPTTWKWNFGDGTSSTEKNPVHTYSTAGSYTVTLTASNTAGSNTATKSSYVT
VTTGTTGTKPVLQYWGSPRSGTAPLTVTFKDNSSGSPTAWNWSFGDGAYSNEKYPKHTYMAPGSYTISLTASNAAGSNTL
IKNNYIVVTNA
>Mature_651_residues
MDGGIGIKNKVLILLGIFLILSLISGIGSAAEIIVQPGDSIQAAIDSSKSGDTITIKPGTYTENVNITKSSLLIRSESGN
PDETIIKAKSSSSNALSMQAWNVTIKGIKTIGASGSSYSGIYMYKCNQCVIENNKMMNNGYGIRIVSSNRCTVSKNTVLN
NGVYGIYLGSCSNNTISGNTATNDNRGIHVGSADDNTISDNTVTSNNILGMYVCGLSDRNLIYNNYFNNTNITIKNGTGN
AYNTAKASGKNIVGGTYIGGNFWGKPDGSGFSNKATDTDRDGISDSAYSIPGSIYIDHLPLVVPAPLTAPGASFSSNVTS
GTAPLNVLFTDTSTGSPTAWNWNFGDGTSSTQKNPAHVYSTAGTYTVTLTASNSAGSNTATKTNYVTVTTGTTGTKPVLQ
YWGSPRSGTAPLTVTFKDNSSGSPTAWNWSFGDGAYSNEKYPKHTYMAPGSYTISLTASNAAGSNTLTKSNYIVVTGTSS
QTPVAAFSASPTAGTAPLSVSFTDSSTGSPTTWKWNFGDGTSSTEKNPVHTYSTAGSYTVTLTASNTAGSNTATKSSYVT
VTTGTTGTKPVLQYWGSPRSGTAPLTVTFKDNSSGSPTAWNWSFGDGAYSNEKYPKHTYMAPGSYTISLTASNAAGSNTL
IKNNYIVVTNA

Specific function: Unknown

COG id: COG3291

COG function: function code R; FOG: PKD repeat

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 5 PKD domains [H]

Homologues:

Organism=Homo sapiens, GI205360962, Length=371, Percent_Identity=23.7196765498652, Blast_Score=77, Evalue=5e-14,
Organism=Homo sapiens, GI205360954, Length=371, Percent_Identity=23.7196765498652, Blast_Score=77, Evalue=5e-14,
Organism=Homo sapiens, GI310113006, Length=378, Percent_Identity=23.8095238095238, Blast_Score=69, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022409
- InterPro:   IPR000601 [H]

Pfam domain/function: PF00801 PKD [H]

EC number: NA

Molecular weight: Translated: 67826; Mature: 67826

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: PS50093 PKD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGGIGIKNKVLILLGIFLILSLISGIGSAAEIIVQPGDSIQAAIDSSKSGDTITIKPGT
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEECCCCCCCEEEECCCC
YTENVNITKSSLLIRSESGNPDETIIKAKSSSSNALSMQAWNVTIKGIKTIGASGSSYSG
EECCCEEEEEEEEEECCCCCCCCEEEEECCCCCCEEEEEEEEEEEEEEEEECCCCCCCCC
IYMYKCNQCVIENNKMMNNGYGIRIVSSNRCTVSKNTVLNNGVYGIYLGSCSNNTISGNT
EEEEECCEEEEECCEEECCCCEEEEEECCCEEEECCCEECCCEEEEEEECCCCCEECCCC
ATNDNRGIHVGSADDNTISDNTVTSNNILGMYVCGLSDRNLIYNNYFNNTNITIKNGTGN
CCCCCCEEEECCCCCCCCCCCEEECCCEEEEEEECCCCCCEEEEEEECCCEEEEECCCCC
AYNTAKASGKNIVGGTYIGGNFWGKPDGSGFSNKATDTDRDGISDSAYSIPGSIYIDHLP
CCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEEEECCC
LVVPAPLTAPGASFSSNVTSGTAPLNVLFTDTSTGSPTAWNWNFGDGTSSTQKNPAHVYS
EEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCEEEE
TAGTYTVTLTASNSAGSNTATKTNYVTVTTGTTGTKPVLQYWGSPRSGTAPLTVTFKDNS
CCCEEEEEEEECCCCCCCCCCEEEEEEEEECCCCCCHHHHHCCCCCCCCCCEEEEECCCC
SGSPTAWNWSFGDGAYSNEKYPKHTYMAPGSYTISLTASNAAGSNTLTKSNYIVVTGTSS
CCCCEEEEECCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCCEECCCEEEEECCCC
QTPVAAFSASPTAGTAPLSVSFTDSSTGSPTTWKWNFGDGTSSTEKNPVHTYSTAGSYTV
CCCEEEEECCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCEEE
TLTASNTAGSNTATKSSYVTVTTGTTGTKPVLQYWGSPRSGTAPLTVTFKDNSSGSPTAW
EEEECCCCCCCCCCCCEEEEEEECCCCCCHHHHHCCCCCCCCCCEEEEECCCCCCCCEEE
NWSFGDGAYSNEKYPKHTYMAPGSYTISLTASNAAGSNTLIKNNYIVVTNA
EECCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCEEEECCEEEEECC
>Mature Secondary Structure
MDGGIGIKNKVLILLGIFLILSLISGIGSAAEIIVQPGDSIQAAIDSSKSGDTITIKPGT
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEECCCCCCCEEEECCCC
YTENVNITKSSLLIRSESGNPDETIIKAKSSSSNALSMQAWNVTIKGIKTIGASGSSYSG
EECCCEEEEEEEEEECCCCCCCCEEEEECCCCCCEEEEEEEEEEEEEEEEECCCCCCCCC
IYMYKCNQCVIENNKMMNNGYGIRIVSSNRCTVSKNTVLNNGVYGIYLGSCSNNTISGNT
EEEEECCEEEEECCEEECCCCEEEEEECCCEEEECCCEECCCEEEEEEECCCCCEECCCC
ATNDNRGIHVGSADDNTISDNTVTSNNILGMYVCGLSDRNLIYNNYFNNTNITIKNGTGN
CCCCCCEEEECCCCCCCCCCCEEECCCEEEEEEECCCCCCEEEEEEECCCEEEEECCCCC
AYNTAKASGKNIVGGTYIGGNFWGKPDGSGFSNKATDTDRDGISDSAYSIPGSIYIDHLP
CCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEEEECCC
LVVPAPLTAPGASFSSNVTSGTAPLNVLFTDTSTGSPTAWNWNFGDGTSSTQKNPAHVYS
EEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCEEEE
TAGTYTVTLTASNSAGSNTATKTNYVTVTTGTTGTKPVLQYWGSPRSGTAPLTVTFKDNS
CCCEEEEEEEECCCCCCCCCCEEEEEEEEECCCCCCHHHHHCCCCCCCCCCEEEEECCCC
SGSPTAWNWSFGDGAYSNEKYPKHTYMAPGSYTISLTASNAAGSNTLTKSNYIVVTGTSS
CCCCEEEEECCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCCEECCCEEEEECCCC
QTPVAAFSASPTAGTAPLSVSFTDSSTGSPTTWKWNFGDGTSSTEKNPVHTYSTAGSYTV
CCCEEEEECCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCEEE
TLTASNTAGSNTATKSSYVTVTTGTTGTKPVLQYWGSPRSGTAPLTVTFKDNSSGSPTAW
EEEECCCCCCCCCCCCEEEEEEECCCCCCHHHHHCCCCCCCCCCEEEEECCCCCCCCEEE
NWSFGDGAYSNEKYPKHTYMAPGSYTISLTASNAAGSNTLIKNNYIVVTNA
EECCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCEEEECCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]