| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is opuE [H]
Identifier: 21227651
GI number: 21227651
Start: 1846662
End: 1848581
Strand: Reverse
Name: opuE [H]
Synonym: MM_1549
Alternate gene names: 21227651
Gene position: 1848581-1846662 (Counterclockwise)
Preceding gene: 21227653
Following gene: 21227649
Centisome position: 45.13
GC content: 47.81
Gene sequence:
>1920_bases ATGGATGGTTATAATATCTTTTTGGCTTTGCTTGCAGTCTATATAATCGGACTTGTGACTGTTGGCTGGTACTTCAATAA AAAACAGAAATCTATTACCGACTTCTGGCTTGCAGGACGAAAAGTAGGTCCCGGAGCACTTGGATTTTCAGCTGCAGCAT CATGGCTTACAGCTGGAGGAATTCTTGCGGTTATCGGGTATTTCATACTGCAGGGAATGGGCTCCATATGGGCTTTTGTA GCTCCAAATATTGTCGCCCTCCTTGTCATCGCTGTACTTGTGGGCAAGATCAAAAACCTGCCTGCAATTACACAGCCTGA ACTTCTGGAACAGCGTTATGGGAGCTCAGTCCGGTGGCCTGTTGCTCTGATCATTACCGTAGTGATGATTCTTTTTGCAG TAGCAGATGTTACAGGTCTCTCCCTCGTGCTTCAGGTATTTTACGGGCTTGATCCGCTCTATGCTGCGGCTATTGTTGCA ATTGCAGTATCCCTTTACGTAACCCTCGGCGGCCTTTCGGCAGTAGTCTGGACAGATGTCATCCAGTTCTCGTTCCTCTC TCTTTTTACAATAGCAATGGCTTTTGCTGCAGTAGGGACAGTGGCAGATGGAGGTCTTAATACTCCTGCAATAAGCAGCT CTGAACTCTTCGGGAGCCTTCCCGATGTATGGTGGAACCCCTTGTCAATCGGCCTCCCCATGGTTCTGATCTTCTGCCTT GCCATTATTCCGGGATGGATTACAGAACAGGACCCCTGGCAGAAGGTATGGGCTGCAAGAGATGCAAAATCCGCCCGTAC AGGGATGATCATAGGGTCTCTTATGATCACCATAGTTTTCTCGGCATGTGCTGTAATAGCAATAGCTCTCAGTTCCATAT ACCCGGAAATCCCGCAAATGGGCTTCCCTGCAGGCATGGCACAGGCAGAGCCTGCACTTCTTGCTTTTGTCAGTGAGCGT TTTGCTTCTGCTCCCCTGATTGTAGCTATAAGTGCAATAGGGCTTGCAGCAGCTTCCATGTCCTGCGCTGACACCTTTGC AACATCTGGAGCTTCCTGCATTTCAAGGGACATTTATCAAAGGTACATAAAGCCCGATGCTACAATGAAGGAGATGCTCA TTGTAAACAGGGTGAGTGTGCTAATTATCGTACTTGCAGCAACAGCTGGCTCATTTATTATCCCCAACATTATAGATGCA ATTCATATTGCTACCTTTATTGCAAGCGCTTCTTACTTCTTTCCTCTTATGGGAGGGCTCTACTGGAAAAGAGCGACAAA AGAAGGAGCTTTTGCAGGGATGGTAATCGGATTTATTGTCCAGGTAGCCCTTGTAGTTCTGGACCTTGTAAAAACCCCTC CCCTGGCTCCAAGCTACCTTGAGACCATCCATCCCGTTCTGATGAGCCACGGTGTTATTGTGGGAATGAGCCTGAGTGCA ATTGCATTCTTTGGGGTTTCCCTGATGACAAAACCCTCAAGCAGGGTTAACCTTGCACCCTTTTTCGAAGAAGAAGCAGA AGAGCTTGCCCGCTATGAGACAGGTGAGATCAACGAAGCAGATCCATCGTACAGCGCATTCCTCAAAAACGTTAATGAGA AAGTTGCAGGGGAGCGTACTCACCTTCAGCTTAACCTCAGGACTTCAGGAACCCTCAGCTGGCACGAGCTTGTAGAAAAG CTGAAAAGCAGTTCTCCTGCATGGGTTACTCCTACGGGGCTTGACTCCGTATACAGGTTGACCCACGGAGACATGCTCGC CTGCGTGGCTGTTACCAGAGGAAGCGGAGAACAGGACATCTGGCTCAAAGCCGAACCAAAAATAGAAACCGTAGGAAGGC AGAGAAAAGAGCTTTTTACAGCCTATGAAGAGCTGAAGAAAGTGCTTGACCAGAAAGGAGTTAAACTGGATTTTTACTGA
Upstream 100 bases:
>100_bases TATAAAAACTAAGTACTCCTGAATAATTGTATTAATTTCGGAAAAATTTCTATAATCAGATACTACTCATACACATTATG ATTCTTTTAAAGGTGTCCTT
Downstream 100 bases:
>100_bases CTTAAATTTGAATACTTAAGACCGGGGTTCCTTACAGAACCCTGCCTTAATTTCTTTTTTTGGAACTTAACATTTCAGGA ATACAGAGCTTTTTCAATGA
Product: sodium/proline symporter
Products: NA
Alternate protein names: Sodium/proline symporter [H]
Number of amino acids: Translated: 639; Mature: 639
Protein sequence:
>639_residues MDGYNIFLALLAVYIIGLVTVGWYFNKKQKSITDFWLAGRKVGPGALGFSAAASWLTAGGILAVIGYFILQGMGSIWAFV APNIVALLVIAVLVGKIKNLPAITQPELLEQRYGSSVRWPVALIITVVMILFAVADVTGLSLVLQVFYGLDPLYAAAIVA IAVSLYVTLGGLSAVVWTDVIQFSFLSLFTIAMAFAAVGTVADGGLNTPAISSSELFGSLPDVWWNPLSIGLPMVLIFCL AIIPGWITEQDPWQKVWAARDAKSARTGMIIGSLMITIVFSACAVIAIALSSIYPEIPQMGFPAGMAQAEPALLAFVSER FASAPLIVAISAIGLAAASMSCADTFATSGASCISRDIYQRYIKPDATMKEMLIVNRVSVLIIVLAATAGSFIIPNIIDA IHIATFIASASYFFPLMGGLYWKRATKEGAFAGMVIGFIVQVALVVLDLVKTPPLAPSYLETIHPVLMSHGVIVGMSLSA IAFFGVSLMTKPSSRVNLAPFFEEEAEELARYETGEINEADPSYSAFLKNVNEKVAGERTHLQLNLRTSGTLSWHELVEK LKSSSPAWVTPTGLDSVYRLTHGDMLACVAVTRGSGEQDIWLKAEPKIETVGRQRKELFTAYEELKKVLDQKGVKLDFY
Sequences:
>Translated_639_residues MDGYNIFLALLAVYIIGLVTVGWYFNKKQKSITDFWLAGRKVGPGALGFSAAASWLTAGGILAVIGYFILQGMGSIWAFV APNIVALLVIAVLVGKIKNLPAITQPELLEQRYGSSVRWPVALIITVVMILFAVADVTGLSLVLQVFYGLDPLYAAAIVA IAVSLYVTLGGLSAVVWTDVIQFSFLSLFTIAMAFAAVGTVADGGLNTPAISSSELFGSLPDVWWNPLSIGLPMVLIFCL AIIPGWITEQDPWQKVWAARDAKSARTGMIIGSLMITIVFSACAVIAIALSSIYPEIPQMGFPAGMAQAEPALLAFVSER FASAPLIVAISAIGLAAASMSCADTFATSGASCISRDIYQRYIKPDATMKEMLIVNRVSVLIIVLAATAGSFIIPNIIDA IHIATFIASASYFFPLMGGLYWKRATKEGAFAGMVIGFIVQVALVVLDLVKTPPLAPSYLETIHPVLMSHGVIVGMSLSA IAFFGVSLMTKPSSRVNLAPFFEEEAEELARYETGEINEADPSYSAFLKNVNEKVAGERTHLQLNLRTSGTLSWHELVEK LKSSSPAWVTPTGLDSVYRLTHGDMLACVAVTRGSGEQDIWLKAEPKIETVGRQRKELFTAYEELKKVLDQKGVKLDFY >Mature_639_residues MDGYNIFLALLAVYIIGLVTVGWYFNKKQKSITDFWLAGRKVGPGALGFSAAASWLTAGGILAVIGYFILQGMGSIWAFV APNIVALLVIAVLVGKIKNLPAITQPELLEQRYGSSVRWPVALIITVVMILFAVADVTGLSLVLQVFYGLDPLYAAAIVA IAVSLYVTLGGLSAVVWTDVIQFSFLSLFTIAMAFAAVGTVADGGLNTPAISSSELFGSLPDVWWNPLSIGLPMVLIFCL AIIPGWITEQDPWQKVWAARDAKSARTGMIIGSLMITIVFSACAVIAIALSSIYPEIPQMGFPAGMAQAEPALLAFVSER FASAPLIVAISAIGLAAASMSCADTFATSGASCISRDIYQRYIKPDATMKEMLIVNRVSVLIIVLAATAGSFIIPNIIDA IHIATFIASASYFFPLMGGLYWKRATKEGAFAGMVIGFIVQVALVVLDLVKTPPLAPSYLETIHPVLMSHGVIVGMSLSA IAFFGVSLMTKPSSRVNLAPFFEEEAEELARYETGEINEADPSYSAFLKNVNEKVAGERTHLQLNLRTSGTLSWHELVEK LKSSSPAWVTPTGLDSVYRLTHGDMLACVAVTRGSGEQDIWLKAEPKIETVGRQRKELFTAYEELKKVLDQKGVKLDFY
Specific function: Catalyzes the sodium-dependent uptake of extracellular proline [H]
COG id: COG0591
COG function: function code ER; Na+/proline symporter
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family [H]
Homologues:
Organism=Homo sapiens, GI109659836, Length=445, Percent_Identity=22.9213483146067, Blast_Score=84, Evalue=6e-16, Organism=Homo sapiens, GI14140236, Length=640, Percent_Identity=21.875, Blast_Score=81, Evalue=3e-15, Organism=Homo sapiens, GI109659839, Length=459, Percent_Identity=23.5294117647059, Blast_Score=79, Evalue=2e-14, Organism=Homo sapiens, GI206597487, Length=477, Percent_Identity=22.6415094339623, Blast_Score=74, Evalue=3e-13, Organism=Homo sapiens, GI206597483, Length=477, Percent_Identity=22.6415094339623, Blast_Score=74, Evalue=4e-13, Organism=Homo sapiens, GI17941285, Length=556, Percent_Identity=24.8201438848921, Blast_Score=72, Evalue=2e-12, Organism=Homo sapiens, GI11141885, Length=425, Percent_Identity=24.7058823529412, Blast_Score=69, Evalue=1e-11, Organism=Escherichia coli, GI1790503, Length=467, Percent_Identity=23.5546038543897, Blast_Score=79, Evalue=7e-16, Organism=Escherichia coli, GI1787251, Length=460, Percent_Identity=25.6521739130435, Blast_Score=77, Evalue=3e-15, Organism=Escherichia coli, GI87082237, Length=472, Percent_Identity=21.8220338983051, Blast_Score=71, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17539284, Length=480, Percent_Identity=22.7083333333333, Blast_Score=69, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6321771, Length=580, Percent_Identity=23.9655172413793, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI24650192, Length=473, Percent_Identity=23.0443974630021, Blast_Score=72, Evalue=1e-12, Organism=Drosophila melanogaster, GI28573698, Length=447, Percent_Identity=23.7136465324385, Blast_Score=66, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011851 - InterPro: IPR001734 - InterPro: IPR018212 - InterPro: IPR019900 [H]
Pfam domain/function: PF00474 SSF [H]
EC number: NA
Molecular weight: Translated: 68780; Mature: 68780
Theoretical pI: Translated: 6.01; Mature: 6.01
Prosite motif: PS00457 NA_SOLUT_SYMP_2 ; PS50283 NA_SOLUT_SYMP_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDGYNIFLALLAVYIIGLVTVGWYFNKKQKSITDFWLAGRKVGPGALGFSAAASWLTAGG CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC ILAVIGYFILQGMGSIWAFVAPNIVALLVIAVLVGKIKNLPAITQPELLEQRYGSSVRWP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCHH VALIITVVMILFAVADVTGLSLVLQVFYGLDPLYAAAIVAIAVSLYVTLGGLSAVVWTDV HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IQFSFLSLFTIAMAFAAVGTVADGGLNTPAISSSELFGSLPDVWWNPLSIGLPMVLIFCL HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCHHHCCCHHCCHHHHHHHHH AIIPGWITEQDPWQKVWAARDAKSARTGMIIGSLMITIVFSACAVIAIALSSIYPEIPQM HHCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC GFPAGMAQAEPALLAFVSERFASAPLIVAISAIGLAAASMSCADTFATSGASCISRDIYQ CCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH RYIKPDATMKEMLIVNRVSVLIIVLAATAGSFIIPNIIDAIHIATFIASASYFFPLMGGL HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH YWKRATKEGAFAGMVIGFIVQVALVVLDLVKTPPLAPSYLETIHPVLMSHGVIVGMSLSA HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHEEHHHHH IAFFGVSLMTKPSSRVNLAPFFEEEAEELARYETGEINEADPSYSAFLKNVNEKVAGERT HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCE HLQLNLRTSGTLSWHELVEKLKSSSPAWVTPTGLDSVYRLTHGDMLACVAVTRGSGEQDI EEEEEECCCCCCHHHHHHHHHHCCCCCEECCCCHHHHHHHCCCCEEEEEEEECCCCCCCE WLKAEPKIETVGRQRKELFTAYEELKKVLDQKGVKLDFY EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCC >Mature Secondary Structure MDGYNIFLALLAVYIIGLVTVGWYFNKKQKSITDFWLAGRKVGPGALGFSAAASWLTAGG CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC ILAVIGYFILQGMGSIWAFVAPNIVALLVIAVLVGKIKNLPAITQPELLEQRYGSSVRWP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCHH VALIITVVMILFAVADVTGLSLVLQVFYGLDPLYAAAIVAIAVSLYVTLGGLSAVVWTDV HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IQFSFLSLFTIAMAFAAVGTVADGGLNTPAISSSELFGSLPDVWWNPLSIGLPMVLIFCL HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCHHHCCCHHCCHHHHHHHHH AIIPGWITEQDPWQKVWAARDAKSARTGMIIGSLMITIVFSACAVIAIALSSIYPEIPQM HHCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC GFPAGMAQAEPALLAFVSERFASAPLIVAISAIGLAAASMSCADTFATSGASCISRDIYQ CCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH RYIKPDATMKEMLIVNRVSVLIIVLAATAGSFIIPNIIDAIHIATFIASASYFFPLMGGL HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH YWKRATKEGAFAGMVIGFIVQVALVVLDLVKTPPLAPSYLETIHPVLMSHGVIVGMSLSA HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHEEHHHHH IAFFGVSLMTKPSSRVNLAPFFEEEAEELARYETGEINEADPSYSAFLKNVNEKVAGERT HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCE HLQLNLRTSGTLSWHELVEKLKSSSPAWVTPTGLDSVYRLTHGDMLACVAVTRGSGEQDI EEEEEECCCCCCHHHHHHHHHHCCCCCEECCCCHHHHHHHCCCCEEEEEEEECCCCCCCE WLKAEPKIETVGRQRKELFTAYEELKKVLDQKGVKLDFY EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8969499; 9384377 [H]