Definition Methanosarcina mazei Go1 chromosome, complete genome.
Accession NC_003901
Length 4,096,345

Click here to switch to the map view.

The map label for this gene is yqeI [H]

Identifier: 21227587

GI number: 21227587

Start: 1769072

End: 1769332

Strand: Direct

Name: yqeI [H]

Synonym: MM_1485

Alternate gene names: 21227587

Gene position: 1769072-1769332 (Clockwise)

Preceding gene: 21227582

Following gene: 21227588

Centisome position: 43.19

GC content: 42.53

Gene sequence:

>261_bases
ATGGAGAAAGAAAAATTATACCGGCTGAAATCCGAAGCAAACAAAATAAGTCCTATTCTTAACATTGGAAAGAATGGGGT
CACCGACACCCTGATTGAAGAACTGAATAAACAGATAAAAGCCAACAGGCTCGTAAAGGTCAAAGTACTCAAAAGCGCAG
AAGAAGGAAAAGACCTGAAAACTATCGCAGATGAGCTTGCCGAAGCAACAAGGTCCACGCTTATTGATGTACGCGGCAGG
ACAGTTGTGCTGTACAGGTAA

Upstream 100 bases:

>100_bases
AGAATTATTTCATTGACGCTGTACATATCTCATCACACTGGTTGTGTGAGCTTTTTATAACTGGCAGGCGAGTTTAATCA
CTGGTTATGGAGGAAGGGCA

Downstream 100 bases:

>100_bases
GATTCCGGGGAACAGCCTTACTTAAAGGCAGAACCTTACTCCTTTAGCTTTCCCCTGAATCTCGTTTTTCCGGCTCTTCA
GAAAGGGACATGTCCCGGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 86; Mature: 86

Protein sequence:

>86_residues
MEKEKLYRLKSEANKISPILNIGKNGVTDTLIEELNKQIKANRLVKVKVLKSAEEGKDLKTIADELAEATRSTLIDVRGR
TVVLYR

Sequences:

>Translated_86_residues
MEKEKLYRLKSEANKISPILNIGKNGVTDTLIEELNKQIKANRLVKVKVLKSAEEGKDLKTIADELAEATRSTLIDVRGR
TVVLYR
>Mature_86_residues
MEKEKLYRLKSEANKISPILNIGKNGVTDTLIEELNKQIKANRLVKVKVLKSAEEGKDLKTIADELAEATRSTLIDVRGR
TVVLYR

Specific function: Unknown

COG id: COG1534

COG function: function code J; Predicted RNA-binding protein containing KH domain, possibly ribosomal protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CRM domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001890
- InterPro:   IPR017924
- ProDom:   PD010559 [H]

Pfam domain/function: PF01985 CRS1_YhbY [H]

EC number: NA

Molecular weight: Translated: 9710; Mature: 9710

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKEKLYRLKSEANKISPILNIGKNGVTDTLIEELNKQIKANRLVKVKVLKSAEEGKDLK
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHH
TIADELAEATRSTLIDVRGRTVVLYR
HHHHHHHHHHHHHHHCCCCCEEEEEC
>Mature Secondary Structure
MEKEKLYRLKSEANKISPILNIGKNGVTDTLIEELNKQIKANRLVKVKVLKSAEEGKDLK
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHH
TIADELAEATRSTLIDVRGRTVVLYR
HHHHHHHHHHHHHHHCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]