| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227405
Identifier: 21227405
GI number: 21227405
Start: 1550681
End: 1551682
Strand: Direct
Name: 21227405
Synonym: MM_1303
Alternate gene names: NA
Gene position: 1550681-1551682 (Clockwise)
Preceding gene: 21227404
Following gene: 21227406
Centisome position: 37.86
GC content: 43.41
Gene sequence:
>1002_bases GTGATCCTATTGAGCAAAAATAAGACATTTGTACCAGTCGAAAAAATGAATGTTCAGCCAAATCTGAACAAGTCAAGCAA AAAGTCGCAGCAGAAGGACCCACATATGGTCAGCAGCAGGGGTACAATGAGAATTGGCCCTGATTTTAAGTCCCGAATTT CAGAACATGAGGGGAAAATTCTTGCCCTAGCAACAAGAAATGTGGTAACACTCCCTCCTACTGCAACCATTATGGAAGCA ATAAAAATTATGACTGAAAGGAGATTCAGGCGTATTCCTATTACAAATGCAGGAACAGGGAGGCTGGAAGGAGTAATTAC TTCTGTTGATATCATTGATTTCCTGGGAGGCGGCAGCAGGAATCTCCTTGTCACAAACCGTTTTAAAGGCAACCTTCTAG CTGCAATAAACGAAGAGGTACGGCAGATCATGGATACCAATGCTGCATACATCCATGATCAGGCAGACTTTAAAGAAGCC GTCAAAACAATGCTTGAAAGGAGGACCGGTGGCCTGCCTATAGTAAACAGTGAAATGCAGGTCGTCGCAATCTTTACCGA AAGAAATGCCGTAGAATTAATGGCCGGGCTTGTGACAAATAAAACTGTTGATGAGTATATGACTAAAAATGTCACAATGG TAACGACAGATACTACTATAGGGCAGGCTGCAAAAGTCATGGTGCAGAATAGATTCCGAAGGCTTCCCGTGGTAAAAGAC GGGATCTTTGCAGGAATAGTTACCGCCTCGGATATCGTTCATTTCATGGGAAAAGGAGATGCATTCAGCAAACTCACAAC AGGGAATATTCATGAAGCTCTGGACCAGCCTGTAGGCTCTATTATCTCAAAAGAACTGATCTGGACCAGCCCTGGCACAG ATATGGGGAAGGCTATGGAAATTATGCTCGAGAAAAAGATAGGTTCGCTTCCGATTCTGGAAGAGGGAATGCTACGTGGT ATTATTACGGAGAGCGATTTCCTGAGAGGTTTTGACTTTTAA
Upstream 100 bases:
>100_bases GGTCCTGAGGTTGTAATTGGATCCTCAGGAAAGTTCCTGCTAATATGCAGGTAGAGTAAAAACGGAAGATGAAAAAAGCA ATTAACTGCAACTCGATTCG
Downstream 100 bases:
>100_bases CGGGAGTTTTGACCAGGCTCAAATGAAAATTCCAGCGAACAGGAAAAGGTGTGTGTCGAACCTGATAGCTTGGTAAAAAC AGAAAATTTCTGTTAAAACT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 333; Mature: 333
Protein sequence:
>333_residues MILLSKNKTFVPVEKMNVQPNLNKSSKKSQQKDPHMVSSRGTMRIGPDFKSRISEHEGKILALATRNVVTLPPTATIMEA IKIMTERRFRRIPITNAGTGRLEGVITSVDIIDFLGGGSRNLLVTNRFKGNLLAAINEEVRQIMDTNAAYIHDQADFKEA VKTMLERRTGGLPIVNSEMQVVAIFTERNAVELMAGLVTNKTVDEYMTKNVTMVTTDTTIGQAAKVMVQNRFRRLPVVKD GIFAGIVTASDIVHFMGKGDAFSKLTTGNIHEALDQPVGSIISKELIWTSPGTDMGKAMEIMLEKKIGSLPILEEGMLRG IITESDFLRGFDF
Sequences:
>Translated_333_residues MILLSKNKTFVPVEKMNVQPNLNKSSKKSQQKDPHMVSSRGTMRIGPDFKSRISEHEGKILALATRNVVTLPPTATIMEA IKIMTERRFRRIPITNAGTGRLEGVITSVDIIDFLGGGSRNLLVTNRFKGNLLAAINEEVRQIMDTNAAYIHDQADFKEA VKTMLERRTGGLPIVNSEMQVVAIFTERNAVELMAGLVTNKTVDEYMTKNVTMVTTDTTIGQAAKVMVQNRFRRLPVVKD GIFAGIVTASDIVHFMGKGDAFSKLTTGNIHEALDQPVGSIISKELIWTSPGTDMGKAMEIMLEKKIGSLPILEEGMLRG IITESDFLRGFDF >Mature_333_residues MILLSKNKTFVPVEKMNVQPNLNKSSKKSQQKDPHMVSSRGTMRIGPDFKSRISEHEGKILALATRNVVTLPPTATIMEA IKIMTERRFRRIPITNAGTGRLEGVITSVDIIDFLGGGSRNLLVTNRFKGNLLAAINEEVRQIMDTNAAYIHDQADFKEA VKTMLERRTGGLPIVNSEMQVVAIFTERNAVELMAGLVTNKTVDEYMTKNVTMVTTDTTIGQAAKVMVQNRFRRLPVVKD GIFAGIVTASDIVHFMGKGDAFSKLTTGNIHEALDQPVGSIISKELIWTSPGTDMGKAMEIMLEKKIGSLPILEEGMLRG IITESDFLRGFDF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 4 CBS domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR000644 [H]
Pfam domain/function: PF00571 CBS [H]
EC number: NA
Molecular weight: Translated: 36798; Mature: 36798
Theoretical pI: Translated: 10.11; Mature: 10.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 5.4 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 5.4 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MILLSKNKTFVPVEKMNVQPNLNKSSKKSQQKDPHMVSSRGTMRIGPDFKSRISEHEGKI CEEECCCCEEEEHHHCCCCCCCCCHHHHHHCCCCCEECCCCCEEECCCHHHHHHHCCCCE LALATRNVVTLPPTATIMEAIKIMTERRFRRIPITNAGTGRLEGVITSVDIIDFLGGGSR EEEEECCEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHEEHHHHHHHHHCCCCC NLLVTNRFKGNLLAAINEEVRQIMDTNAAYIHDQADFKEAVKTMLERRTGGLPIVNSEMQ CEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHCCCCCEECCCCE VVAIFTERNAVELMAGLVTNKTVDEYMTKNVTMVTTDTTIGQAAKVMVQNRFRRLPVVKD EEEEEECCCHHHHHHHHHHCCHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCC GIFAGIVTASDIVHFMGKGDAFSKLTTGNIHEALDQPVGSIISKELIWTSPGTDMGKAME CHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHEEECCCCCHHHHHH IMLEKKIGSLPILEEGMLRGIITESDFLRGFDF HHHHHHCCCCCCHHHHHHHHHCCCHHHHHCCCC >Mature Secondary Structure MILLSKNKTFVPVEKMNVQPNLNKSSKKSQQKDPHMVSSRGTMRIGPDFKSRISEHEGKI CEEECCCCEEEEHHHCCCCCCCCCHHHHHHCCCCCEECCCCCEEECCCHHHHHHHCCCCE LALATRNVVTLPPTATIMEAIKIMTERRFRRIPITNAGTGRLEGVITSVDIIDFLGGGSR EEEEECCEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHEEHHHHHHHHHCCCCC NLLVTNRFKGNLLAAINEEVRQIMDTNAAYIHDQADFKEAVKTMLERRTGGLPIVNSEMQ CEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHCCCCCEECCCCE VVAIFTERNAVELMAGLVTNKTVDEYMTKNVTMVTTDTTIGQAAKVMVQNRFRRLPVVKD EEEEEECCCHHHHHHHHHHCCHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCC GIFAGIVTASDIVHFMGKGDAFSKLTTGNIHEALDQPVGSIISKELIWTSPGTDMGKAME CHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHEEECCCCCHHHHHH IMLEKKIGSLPILEEGMLRGIITESDFLRGFDF HHHHHHCCCCCCHHHHHHHHHCCCHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]