| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227296
Identifier: 21227296
GI number: 21227296
Start: 1419743
End: 1420639
Strand: Direct
Name: 21227296
Synonym: MM_1194
Alternate gene names: NA
Gene position: 1419743-1420639 (Clockwise)
Preceding gene: 21227292
Following gene: 21227297
Centisome position: 34.66
GC content: 45.82
Gene sequence:
>897_bases GTGATAAAAATGACCGGGAACAGACAATTTTCTCTTGATCTGCTGATTGTAGCAGCTCTTGTGGTCCTTACTGATATCTT TGTACTTGTGCCCCCACTCAGCGGAAGCTTTCTGCGCACAGTCCTCGGACTCCTTCTGGTTCTATTCCTGCCGGGATATG CACTGACCGCAGCTCTTTTGCCTGCAAAAAAGGATCTGGAAGGAATTGAAAGAGCACTTCTCTCTTTAGGGTTAAGTATC GCAATAACCCCGCTTATGGGATTTGGAATGAACTATACTTCCTGGGGGATCAGGGAAATTCCTGTACTCGCAGGACTTTC AGCTTTTACTCTTCTCAGCTGTGGGGCAGCATACTATAGAAGATCCAGGTTACCTGAAACTGAAGCTTTCAATATTACAG GTGAAACTTTTACCTCCACACTGAAAACAGAAATCCTTGAAGAGATCGGATACGGGACCAGCAAAGCCTTTGCAGCCTTG CTGATAATTTCCATACTGGCTTCCCTTGGCAGCCTTGCGTATGTCATAGGAAATCCCAGAGGAGAAGAGCCATTCACTGA ATTTTACATCCTGGGTCCTGATAGGGTGGCTGAGAACTACCCGACAGAATACACACAGGGAAACAGCGGAACGGTTATTG TAGGGGTAAAGAACCATGAGCACAGAAACGTGGATTATACAATGGAAGTCAGGCTCGAAAATCACTCCCTGCCCCTTCCA GAAGACCAGAAATACATCAGCCTTGGACACAACGAATCATTGGAAGAGCCAGTCACTTTTACCCCGTCTGTTGAGGGGAA TAACATGAAACTGGAGTTTCTGCTTTTTAACGAAACCGAAAAGAGTATACCTTACAGGAATACGCACCTCTGGATAAATG TCACAAAGGAGACCTGA
Upstream 100 bases:
>100_bases GTGTATAAATAAATACAAAAAGATTTTGAAAAAGAGGATGTCGCCAGAAAGCTTACATAAGTATAAATTGTAGGAAGAGA GATTACTAAATATTTCCACA
Downstream 100 bases:
>100_bases AGATGGCGTCTTCAGACTATCCTTCTTCTGAACGTGAGGCAGGGCAGATCTCTTTGCCGGAGTTTGGGAAAATGTTCAAA ATACAGACCAGTGAAAAAAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 298; Mature: 298
Protein sequence:
>298_residues MIKMTGNRQFSLDLLIVAALVVLTDIFVLVPPLSGSFLRTVLGLLLVLFLPGYALTAALLPAKKDLEGIERALLSLGLSI AITPLMGFGMNYTSWGIREIPVLAGLSAFTLLSCGAAYYRRSRLPETEAFNITGETFTSTLKTEILEEIGYGTSKAFAAL LIISILASLGSLAYVIGNPRGEEPFTEFYILGPDRVAENYPTEYTQGNSGTVIVGVKNHEHRNVDYTMEVRLENHSLPLP EDQKYISLGHNESLEEPVTFTPSVEGNNMKLEFLLFNETEKSIPYRNTHLWINVTKET
Sequences:
>Translated_298_residues MIKMTGNRQFSLDLLIVAALVVLTDIFVLVPPLSGSFLRTVLGLLLVLFLPGYALTAALLPAKKDLEGIERALLSLGLSI AITPLMGFGMNYTSWGIREIPVLAGLSAFTLLSCGAAYYRRSRLPETEAFNITGETFTSTLKTEILEEIGYGTSKAFAAL LIISILASLGSLAYVIGNPRGEEPFTEFYILGPDRVAENYPTEYTQGNSGTVIVGVKNHEHRNVDYTMEVRLENHSLPLP EDQKYISLGHNESLEEPVTFTPSVEGNNMKLEFLLFNETEKSIPYRNTHLWINVTKET >Mature_298_residues MIKMTGNRQFSLDLLIVAALVVLTDIFVLVPPLSGSFLRTVLGLLLVLFLPGYALTAALLPAKKDLEGIERALLSLGLSI AITPLMGFGMNYTSWGIREIPVLAGLSAFTLLSCGAAYYRRSRLPETEAFNITGETFTSTLKTEILEEIGYGTSKAFAAL LIISILASLGSLAYVIGNPRGEEPFTEFYILGPDRVAENYPTEYTQGNSGTVIVGVKNHEHRNVDYTMEVRLENHSLPLP EDQKYISLGHNESLEEPVTFTPSVEGNNMKLEFLLFNETEKSIPYRNTHLWINVTKET
Specific function: Unknown
COG id: COG4743
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32910; Mature: 32910
Theoretical pI: Translated: 4.80; Mature: 4.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKMTGNRQFSLDLLIVAALVVLTDIFVLVPPLSGSFLRTVLGLLLVLFLPGYALTAALL CEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHC PAKKDLEGIERALLSLGLSIAITPLMGFGMNYTSWGIREIPVLAGLSAFTLLSCGAAYYR CCHHHHHHHHHHHHHHCHHHEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH RSRLPETEAFNITGETFTSTLKTEILEEIGYGTSKAFAALLIISILASLGSLAYVIGNPR HHCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCEEEEECCCC GEEPFTEFYILGPDRVAENYPTEYTQGNSGTVIVGVKNHEHRNVDYTMEVRLENHSLPLP CCCCCCEEEEECCHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCCC EDQKYISLGHNESLEEPVTFTPSVEGNNMKLEFLLFNETEKSIPYRNTHLWINVTKET CCCCEEECCCCCCCCCCEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEECCC >Mature Secondary Structure MIKMTGNRQFSLDLLIVAALVVLTDIFVLVPPLSGSFLRTVLGLLLVLFLPGYALTAALL CEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHC PAKKDLEGIERALLSLGLSIAITPLMGFGMNYTSWGIREIPVLAGLSAFTLLSCGAAYYR CCHHHHHHHHHHHHHHCHHHEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH RSRLPETEAFNITGETFTSTLKTEILEEIGYGTSKAFAALLIISILASLGSLAYVIGNPR HHCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCEEEEECCCC GEEPFTEFYILGPDRVAENYPTEYTQGNSGTVIVGVKNHEHRNVDYTMEVRLENHSLPLP CCCCCCEEEEECCHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCCC EDQKYISLGHNESLEEPVTFTPSVEGNNMKLEFLLFNETEKSIPYRNTHLWINVTKET CCCCEEECCCCCCCCCCEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA