| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227260
Identifier: 21227260
GI number: 21227260
Start: 1377466
End: 1378815
Strand: Direct
Name: 21227260
Synonym: MM_1158
Alternate gene names: NA
Gene position: 1377466-1378815 (Clockwise)
Preceding gene: 21227259
Following gene: 21227262
Centisome position: 33.63
GC content: 45.93
Gene sequence:
>1350_bases GTGTCAGCGGCATTCTCTGAAGATGGACCCTGGATTGCAGTTATTGAAAAAAACGGGAACAGCGTGTATTTTGCAGACCA CAATGAAAACCTGACTAAAGGAGGCTGGATCCTCCTGAGCGGAGGAAATGAAATTCAGCTCCCCCAACCTCTTAATTTTA CATATAACGGGACAGACCACCTTAAGAGTGCAGGAGCTGCTCTTGAACTGAAATCAGAGGCATCAGAGGAAGAAACTGAA ATAACTGTTTCGTACCCGTACACTGCTCATCCTTTTTACACTGAAAAAGACAAAGTGACTCTGGATTACAAAGGTCCTGA AGCCTTCGGGCAGAAGGAGGCTAATATTTACCTGGTTGAAGGGCTTGACCTTAACTCCCTTGATGAGGCTTTCACGGATG CTAGGGACGGAAACTCCGTGAGCCTGAAAGAAGTCTTTGATGACACCACTAATTCTACAACCCTGATAAACACTGTTACC CTGGATGAAAACGGAGACCTCCCCTCTTCCCTGACTCTTGACCCCCTTTATGCTGGCAGCTACGGAGCAGTCGTAATGCT TGCAGGTGATGAAAATGTGGACCCTGAGTCAGAGAGAAAAGTCCTTTCCGCAACATGCTTTGAGGTTCTGGAATATGAAC TGAAAATAAAGTCCCCGAATAAGCTCAAAGATGGCGATAACCTTGAGGTCAGCCTGGACCTGAAAAAAGCTCCTTCTGAG GGGAATTACACATATGGCGCCCTGCTGATAAGGGAAGATGCCTACCGCGCAGAAATATATGCCAGCTCAAATGGGACAGC AGCAGAAACCAGTGTATTTGTTAATGGAATAGATGTCATTGATGAGTTTGACATCAACTCAACTAACTATAAAACAAAAC TCAACAAAGACGAACTCACGACTGAAATTCAGACCCTGATAGGAGAAGGAAACGGTACCATCAGCATAGGAGAACAGAAT CAGAACACACTCTCACTTACTGCTTTTGACCTCCCTCCGGGTGATTACCTTCTCTTTGCAGGCGCCTACGAAAAAGGCAA AGGCATTGTCGGCGTAGCCCAGACCGAGGTATCCATCCGCGAAGCCAAAAAATCTGACGGATCAAATAAAAAACAGGAAA CAAACAATAACCCTGTAACAGAGATCCAGGAGCCCCTCTCCCAGGAAACCGAGGATTCCATTCTTGACACCGCAAGCTCA CTAGGACTGGAAAGCCTCGGGCCTCAGATCAGAGGAGAAGCACTTCAGGCAGCAGAAGTAATAAAGAACCCCCCAAAACT TGCTTCTTTCCTCATAGGGTTTATAGGAACTCTTCTTATCGGGATTGTAATAATAAAGAAACTGCGCTAA
Upstream 100 bases:
>100_bases GGTGCTATAATTGAAGAAGAGAACAGGAATGTATAGAGTTCATGGTGGAATATTCAGGTTAACCCTGACAGTTTTGATTC TTATTTTTTTATTGAGTCCG
Downstream 100 bases:
>100_bases TTGAAGAGGAACAGAAAAATGTGTCAGAGTTTTAAAGCAGGCTTAAATGGAAATTTAACTGAAACCCTGCCTGCTTTAAA TTTTAATTTTTTCAACTAGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 449; Mature: 448
Protein sequence:
>449_residues MSAAFSEDGPWIAVIEKNGNSVYFADHNENLTKGGWILLSGGNEIQLPQPLNFTYNGTDHLKSAGAALELKSEASEEETE ITVSYPYTAHPFYTEKDKVTLDYKGPEAFGQKEANIYLVEGLDLNSLDEAFTDARDGNSVSLKEVFDDTTNSTTLINTVT LDENGDLPSSLTLDPLYAGSYGAVVMLAGDENVDPESERKVLSATCFEVLEYELKIKSPNKLKDGDNLEVSLDLKKAPSE GNYTYGALLIREDAYRAEIYASSNGTAAETSVFVNGIDVIDEFDINSTNYKTKLNKDELTTEIQTLIGEGNGTISIGEQN QNTLSLTAFDLPPGDYLLFAGAYEKGKGIVGVAQTEVSIREAKKSDGSNKKQETNNNPVTEIQEPLSQETEDSILDTASS LGLESLGPQIRGEALQAAEVIKNPPKLASFLIGFIGTLLIGIVIIKKLR
Sequences:
>Translated_449_residues MSAAFSEDGPWIAVIEKNGNSVYFADHNENLTKGGWILLSGGNEIQLPQPLNFTYNGTDHLKSAGAALELKSEASEEETE ITVSYPYTAHPFYTEKDKVTLDYKGPEAFGQKEANIYLVEGLDLNSLDEAFTDARDGNSVSLKEVFDDTTNSTTLINTVT LDENGDLPSSLTLDPLYAGSYGAVVMLAGDENVDPESERKVLSATCFEVLEYELKIKSPNKLKDGDNLEVSLDLKKAPSE GNYTYGALLIREDAYRAEIYASSNGTAAETSVFVNGIDVIDEFDINSTNYKTKLNKDELTTEIQTLIGEGNGTISIGEQN QNTLSLTAFDLPPGDYLLFAGAYEKGKGIVGVAQTEVSIREAKKSDGSNKKQETNNNPVTEIQEPLSQETEDSILDTASS LGLESLGPQIRGEALQAAEVIKNPPKLASFLIGFIGTLLIGIVIIKKLR >Mature_448_residues SAAFSEDGPWIAVIEKNGNSVYFADHNENLTKGGWILLSGGNEIQLPQPLNFTYNGTDHLKSAGAALELKSEASEEETEI TVSYPYTAHPFYTEKDKVTLDYKGPEAFGQKEANIYLVEGLDLNSLDEAFTDARDGNSVSLKEVFDDTTNSTTLINTVTL DENGDLPSSLTLDPLYAGSYGAVVMLAGDENVDPESERKVLSATCFEVLEYELKIKSPNKLKDGDNLEVSLDLKKAPSEG NYTYGALLIREDAYRAEIYASSNGTAAETSVFVNGIDVIDEFDINSTNYKTKLNKDELTTEIQTLIGEGNGTISIGEQNQ NTLSLTAFDLPPGDYLLFAGAYEKGKGIVGVAQTEVSIREAKKSDGSNKKQETNNNPVTEIQEPLSQETEDSILDTASSL GLESLGPQIRGEALQAAEVIKNPPKLASFLIGFIGTLLIGIVIIKKLR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48659; Mature: 48528
Theoretical pI: Translated: 4.09; Mature: 4.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 0.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.2 %Met (Mature Protein) 0.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAAFSEDGPWIAVIEKNGNSVYFADHNENLTKGGWILLSGGNEIQLPQPLNFTYNGTDH CCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCEEEEECCCEEECCCCCCEEECCHHH LKSAGAALELKSEASEEETEITVSYPYTAHPFYTEKDKVTLDYKGPEAFGQKEANIYLVE HHHCCCEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCHHCCCCCCCEEEEE GLDLNSLDEAFTDARDGNSVSLKEVFDDTTNSTTLINTVTLDENGDLPSSLTLDPLYAGS CCCCCCHHHHHHCCCCCCCEEHHHHHCCCCCCEEEEEEEEECCCCCCCCCEEECCEECCC YGAVVMLAGDENVDPESERKVLSATCFEVLEYELKIKSPNKLKDGDNLEVSLDLKKAPSE CCEEEEEECCCCCCCHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCEEEEEEEECCCCC GNYTYGALLIREDAYRAEIYASSNGTAAETSVFVNGIDVIDEFDINSTNYKTKLNKDELT CCEEEEEEEEECCCEEEEEEECCCCCCEEEEEEEECEEEEEECCCCCCCEEEECCHHHHH TEIQTLIGEGNGTISIGEQNQNTLSLTAFDLPPGDYLLFAGAYEKGKGIVGVAQTEVSIR HHHHHHHCCCCCEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCCCCEEEEEECCHHHH EAKKSDGSNKKQETNNNPVTEIQEPLSQETEDSILDTASSLGLESLGPQIRGEALQAAEV HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHCCHHHHHHHH IKNPPKLASFLIGFIGTLLIGIVIIKKLR HCCCHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SAAFSEDGPWIAVIEKNGNSVYFADHNENLTKGGWILLSGGNEIQLPQPLNFTYNGTDH CCCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCEEEEECCCEEECCCCCCEEECCHHH LKSAGAALELKSEASEEETEITVSYPYTAHPFYTEKDKVTLDYKGPEAFGQKEANIYLVE HHHCCCEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCHHCCCCCCCEEEEE GLDLNSLDEAFTDARDGNSVSLKEVFDDTTNSTTLINTVTLDENGDLPSSLTLDPLYAGS CCCCCCHHHHHHCCCCCCCEEHHHHHCCCCCCEEEEEEEEECCCCCCCCCEEECCEECCC YGAVVMLAGDENVDPESERKVLSATCFEVLEYELKIKSPNKLKDGDNLEVSLDLKKAPSE CCEEEEEECCCCCCCHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCEEEEEEEECCCCC GNYTYGALLIREDAYRAEIYASSNGTAAETSVFVNGIDVIDEFDINSTNYKTKLNKDELT CCEEEEEEEEECCCEEEEEEECCCCCCEEEEEEEECEEEEEECCCCCCCEEEECCHHHHH TEIQTLIGEGNGTISIGEQNQNTLSLTAFDLPPGDYLLFAGAYEKGKGIVGVAQTEVSIR HHHHHHHCCCCCEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCCCCEEEEEECCHHHH EAKKSDGSNKKQETNNNPVTEIQEPLSQETEDSILDTASSLGLESLGPQIRGEALQAAEV HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHCCHHHHHHHH IKNPPKLASFLIGFIGTLLIGIVIIKKLR HCCCHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA