| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227225
Identifier: 21227225
GI number: 21227225
Start: 1324827
End: 1326770
Strand: Direct
Name: 21227225
Synonym: MM_1123
Alternate gene names: NA
Gene position: 1324827-1326770 (Clockwise)
Preceding gene: 21227224
Following gene: 21227226
Centisome position: 32.34
GC content: 40.12
Gene sequence:
>1944_bases GTGGGTCATATGGAAATTGTAAAAAAGTGTAAAGAGACATTTACCGGGAATCTTGACATGATTCTCAGCTTCATGGGATT TAGCCTGGGCCTGTTCATTGTTTCATTATATTACCTTATCAATTTAAACCAGCAAGACATTGGACTTGCTGTTCTTTTTG CCTGCTTAATCTATTACGTTTTCAGAAAAAAATTTAAAAACGAAGCCCCTATTTCCCCGGGAAAAGATGAATTAAAGAGC GCACTTAATCTATCCTTTTACTTCGTATTTCTGATAAGCATTTTGATTTATAGCATGCACCTTTATTACAGGCCGTTATC TTACTTTATACTTTTATGCGTACTTGCAGGGATCATAGCCTCGGAAATTCTCTATGTAAAGAAAGGAGACCGAGTAGCTC CCATCCTGCTGCAAATATTCCTCCTTTCAATCCTCATAAGGTCCGGAATTTATTATAATTTTCCAAGCCTTATGGGTTAT GATGCTTATGCTCATGCCGGAATAGCAAAATTGATCACAGAGACAGGAACCGTTCCTCCAATTGAAATCAGCAGTAAATA TTTTTATTACCCACTTGCCCATATTTTTGTCTCCATGACTCAGCTGATGGGCGGGCTGGACGTCAAAGATGGATTCTTTT ATTCCATAGGTTTTGCTAATATCTTTATCACGGCTGGGATTTACCTTATAGGAAAAAAACTTGAAGGCCCCCAGATGGGG TTACTTGCTGCTTTGTTGATAAACCTTAATAACCACAATATTGTCACCGGAATTACCAACATAACACCGGGTTCCCTGGT CCTATGCTACTTTATAATCATTCTCTACGCGGTCTTCAGCGAAAAGCCTGGTCTGGTTCAGGCAGGTCTTCTTCTTCTGG CTACAATCCTGATGGTGCTGACCCACCAGCTGACAACATTTGTTGTTTTTCTGGCTATGATCTCGATTCTGGCGGGAAAA TATCTGCATAACCTTCTTTATGGCAGTTTGCCCACCGCATCAGGCAGCTTCAATTACATACTTTTTTTTGTAATCAGTCT GCAGACCTACTGGATGTTTACATATGTCACTCGGGATACTTCTTTTTTTGAAATGATCTTCAAACCTCTTGTAGAAGTGC TCCAGTCCGGATCCAGCTACTCAAGTGATGAGCTTATCGTAGGAAGCGCGACCAGCCAGAGCTCAATGGAAGTACTGATA CTTCATATAAGCTACCTTGCCCTGCCTTTCTTTGCGATAGGAGGAGTTCTAACCTGGTTTTCCCGCAGGGACGCCGAAAA AATAAATAAATTTTCAATTGCCCTTGTTGTTGCAATTTTATATGGTTTAGCCTATGGGATTCCTTTGCTTGGCATGAGAA ATTTCCTTACAAGCAGGTGGTTCCCATTGATAGCAGTATTTCTGGTACTTGTGTCTGCATCATATATGCTAAAACTTGTG AGCCTGTTCAGCTCCAGAAAAGCAAAAGTTTCTGCGGTATTTGCCATAATGCTGTTATTTTCATTTGTAATGATAACAAC ACCGGGAATAAATAAAGACAACCCTCTTGTAGGAAAAGATACAACTGTAAGAAACCAGTTCAAGAATATTGAGATCCAGG CTGTGAAAACTCTAACTGGAATGTATTCTGGAGGCATCTTGATGGACTCTCCCTATGATAGCTGCCTTTTTTACAGGGAC CCTGGATATGATGTAAATAACGCAACATATTTCGATACTGAGCAGATAGAGTCAAAAGAAATAAGTGGCGACCATATGAT ACTGCTTAGAAGATCGTCCCTTGGTGAACCAGTATCCATAAATGATCCGGAAAGATACGGAGTAAATATAATCAGGCCAT TACCTGCAGAGTTCTTTAACAGTTTCGATGCTCCGGAATATGAACTTGTATATGACAACGCAGAAGTACTGGCTTACCTT AAAAAGAGCAAAGAAGCAAACTAA
Upstream 100 bases:
>100_bases GAAAGAAAAAAAGAATGTGCAACCTGATAAACAGGGGACGTCGGGTTACAAAAATTCTTCATCGGGAAACTATATAATCT CAAAGAAAGTTTAGTGTGTA
Downstream 100 bases:
>100_bases TAAGAATTTATTGGACACTAGATAAGAATTCATTGGAAACTATTATATAAATCGCCTGAGTGAAAGCTCTTATCCATGAC CGGAACTGGTTTAATATATA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 647; Mature: 646
Protein sequence:
>647_residues MGHMEIVKKCKETFTGNLDMILSFMGFSLGLFIVSLYYLINLNQQDIGLAVLFACLIYYVFRKKFKNEAPISPGKDELKS ALNLSFYFVFLISILIYSMHLYYRPLSYFILLCVLAGIIASEILYVKKGDRVAPILLQIFLLSILIRSGIYYNFPSLMGY DAYAHAGIAKLITETGTVPPIEISSKYFYYPLAHIFVSMTQLMGGLDVKDGFFYSIGFANIFITAGIYLIGKKLEGPQMG LLAALLINLNNHNIVTGITNITPGSLVLCYFIIILYAVFSEKPGLVQAGLLLLATILMVLTHQLTTFVVFLAMISILAGK YLHNLLYGSLPTASGSFNYILFFVISLQTYWMFTYVTRDTSFFEMIFKPLVEVLQSGSSYSSDELIVGSATSQSSMEVLI LHISYLALPFFAIGGVLTWFSRRDAEKINKFSIALVVAILYGLAYGIPLLGMRNFLTSRWFPLIAVFLVLVSASYMLKLV SLFSSRKAKVSAVFAIMLLFSFVMITTPGINKDNPLVGKDTTVRNQFKNIEIQAVKTLTGMYSGGILMDSPYDSCLFYRD PGYDVNNATYFDTEQIESKEISGDHMILLRRSSLGEPVSINDPERYGVNIIRPLPAEFFNSFDAPEYELVYDNAEVLAYL KKSKEAN
Sequences:
>Translated_647_residues MGHMEIVKKCKETFTGNLDMILSFMGFSLGLFIVSLYYLINLNQQDIGLAVLFACLIYYVFRKKFKNEAPISPGKDELKS ALNLSFYFVFLISILIYSMHLYYRPLSYFILLCVLAGIIASEILYVKKGDRVAPILLQIFLLSILIRSGIYYNFPSLMGY DAYAHAGIAKLITETGTVPPIEISSKYFYYPLAHIFVSMTQLMGGLDVKDGFFYSIGFANIFITAGIYLIGKKLEGPQMG LLAALLINLNNHNIVTGITNITPGSLVLCYFIIILYAVFSEKPGLVQAGLLLLATILMVLTHQLTTFVVFLAMISILAGK YLHNLLYGSLPTASGSFNYILFFVISLQTYWMFTYVTRDTSFFEMIFKPLVEVLQSGSSYSSDELIVGSATSQSSMEVLI LHISYLALPFFAIGGVLTWFSRRDAEKINKFSIALVVAILYGLAYGIPLLGMRNFLTSRWFPLIAVFLVLVSASYMLKLV SLFSSRKAKVSAVFAIMLLFSFVMITTPGINKDNPLVGKDTTVRNQFKNIEIQAVKTLTGMYSGGILMDSPYDSCLFYRD PGYDVNNATYFDTEQIESKEISGDHMILLRRSSLGEPVSINDPERYGVNIIRPLPAEFFNSFDAPEYELVYDNAEVLAYL KKSKEAN >Mature_646_residues GHMEIVKKCKETFTGNLDMILSFMGFSLGLFIVSLYYLINLNQQDIGLAVLFACLIYYVFRKKFKNEAPISPGKDELKSA LNLSFYFVFLISILIYSMHLYYRPLSYFILLCVLAGIIASEILYVKKGDRVAPILLQIFLLSILIRSGIYYNFPSLMGYD AYAHAGIAKLITETGTVPPIEISSKYFYYPLAHIFVSMTQLMGGLDVKDGFFYSIGFANIFITAGIYLIGKKLEGPQMGL LAALLINLNNHNIVTGITNITPGSLVLCYFIIILYAVFSEKPGLVQAGLLLLATILMVLTHQLTTFVVFLAMISILAGKY LHNLLYGSLPTASGSFNYILFFVISLQTYWMFTYVTRDTSFFEMIFKPLVEVLQSGSSYSSDELIVGSATSQSSMEVLIL HISYLALPFFAIGGVLTWFSRRDAEKINKFSIALVVAILYGLAYGIPLLGMRNFLTSRWFPLIAVFLVLVSASYMLKLVS LFSSRKAKVSAVFAIMLLFSFVMITTPGINKDNPLVGKDTTVRNQFKNIEIQAVKTLTGMYSGGILMDSPYDSCLFYRDP GYDVNNATYFDTEQIESKEISGDHMILLRRSSLGEPVSINDPERYGVNIIRPLPAEFFNSFDAPEYELVYDNAEVLAYLK KSKEAN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 72485; Mature: 72354
Theoretical pI: Translated: 7.87; Mature: 7.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGHMEIVKKCKETFTGNLDMILSFMGFSLGLFIVSLYYLINLNQQDIGLAVLFACLIYYV CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH FRKKFKNEAPISPGKDELKSALNLSFYFVFLISILIYSMHLYYRPLSYFILLCVLAGIIA HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SEILYVKKGDRVAPILLQIFLLSILIRSGIYYNFPSLMGYDAYAHAGIAKLITETGTVPP HHHEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCC IEISSKYFYYPLAHIFVSMTQLMGGLDVKDGFFYSIGFANIFITAGIYLIGKKLEGPQMG CEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHEECCCCCCHHH LLAALLINLNNHNIVTGITNITPGSLVLCYFIIILYAVFSEKPGLVQAGLLLLATILMVL HHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH THQLTTFVVFLAMISILAGKYLHNLLYGSLPTASGSFNYILFFVISLQTYWMFTYVTRDT HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHEEECCH SFFEMIFKPLVEVLQSGSSYSSDELIVGSATSQSSMEVLILHISYLALPFFAIGGVLTWF HHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH SRRDAEKINKFSIALVVAILYGLAYGIPLLGMRNFLTSRWFPLIAVFLVLVSASYMLKLV HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SLFSSRKAKVSAVFAIMLLFSFVMITTPGINKDNPLVGKDTTVRNQFKNIEIQAVKTLTG HHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH MYSGGILMDSPYDSCLFYRDPGYDVNNATYFDTEQIESKEISGDHMILLRRSSLGEPVSI HHCCCEEECCCCCCEEEEECCCCCCCCCEECCHHHHCCCCCCCCEEEEEEECCCCCCCCC NDPERYGVNIIRPLPAEFFNSFDAPEYELVYDNAEVLAYLKKSKEAN CCCHHHCCEEECCCCHHHCCCCCCCCEEEEECCHHHHHHHHHHCCCC >Mature Secondary Structure GHMEIVKKCKETFTGNLDMILSFMGFSLGLFIVSLYYLINLNQQDIGLAVLFACLIYYV CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH FRKKFKNEAPISPGKDELKSALNLSFYFVFLISILIYSMHLYYRPLSYFILLCVLAGIIA HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SEILYVKKGDRVAPILLQIFLLSILIRSGIYYNFPSLMGYDAYAHAGIAKLITETGTVPP HHHEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCC IEISSKYFYYPLAHIFVSMTQLMGGLDVKDGFFYSIGFANIFITAGIYLIGKKLEGPQMG CEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHEECCCCCCHHH LLAALLINLNNHNIVTGITNITPGSLVLCYFIIILYAVFSEKPGLVQAGLLLLATILMVL HHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH THQLTTFVVFLAMISILAGKYLHNLLYGSLPTASGSFNYILFFVISLQTYWMFTYVTRDT HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHEEECCH SFFEMIFKPLVEVLQSGSSYSSDELIVGSATSQSSMEVLILHISYLALPFFAIGGVLTWF HHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH SRRDAEKINKFSIALVVAILYGLAYGIPLLGMRNFLTSRWFPLIAVFLVLVSASYMLKLV HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SLFSSRKAKVSAVFAIMLLFSFVMITTPGINKDNPLVGKDTTVRNQFKNIEIQAVKTLTG HHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH MYSGGILMDSPYDSCLFYRDPGYDVNNATYFDTEQIESKEISGDHMILLRRSSLGEPVSI HHCCCEEECCCCCCEEEEECCCCCCCCCEECCHHHHCCCCCCCCEEEEEEECCCCCCCCC NDPERYGVNIIRPLPAEFFNSFDAPEYELVYDNAEVLAYLKKSKEAN CCCHHHCCEEECCCCHHHCCCCCCCCEEEEECCHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA