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The map label for this gene is 21227107

Identifier: 21227107

GI number: 21227107

Start: 1179579

End: 1180064

Strand: Reverse

Name: 21227107

Synonym: MM_1005

Alternate gene names: NA

Gene position: 1180064-1179579 (Counterclockwise)

Preceding gene: 21227119

Following gene: 21227105

Centisome position: 28.81

GC content: 45.47

Gene sequence:

>486_bases
ATGCAGTGCGAAATATGTGGTGCAGAGATCCGCGGAAAGCCTATATCCGTTACAATCGATAACAGCGAACTCCAGGTCTG
CCAGAAATGTGCACCGTACGGTAAGCCCGTTGATAAGCGGTCTCCCGTATCAAGGAAAGTCTCTCCGGTAGTTCGTACGG
TACCACGAACTGAAAAGAGGCCAAAAAAGGATTTCTTCGATATTCTAAAAGACGAGCTTCTGGACGATTACGATCACATT
ATCCGGGAAGCTAGAGAAGCCCGAGGCTGGTCTCAGGAGGACCTGGCTGAAAACATCAAGGAAAAAGCATCTCTGATCAA
AAAAATAGAACGCAGCGAAATAGTACCCGAAGATTCTGTTAGAAAAAAACTGGAACATGCCCTTAACATTAAACTTACCG
AACGCTTGGATGATGCGGGGCAGGAAGTCTCTCATATGAAGAAAGACACCACCCTTGGTGATATAGTGAAAATAAAGCGC
AAGTAA

Upstream 100 bases:

>100_bases
GACTGCGCATGCTTTCATCCTTACTCTTGGTACTTTCCGTCATGGAGCTCCGAATATTATTTAAGTTCATACCGTATATA
GCGTTTTCGAAGTGATCAAT

Downstream 100 bases:

>100_bases
CAAAGCTCAAGTAACAAGGCCAAATGATCCATGAGTTTTAACTGTAAAGTTTTATATTGAGGTTTTGTTCCACCAGCATA
GTTTCCGGCAGGTTTTTCCT

Product: Zinc finger protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MQCEICGAEIRGKPISVTIDNSELQVCQKCAPYGKPVDKRSPVSRKVSPVVRTVPRTEKRPKKDFFDILKDELLDDYDHI
IREAREARGWSQEDLAENIKEKASLIKKIERSEIVPEDSVRKKLEHALNIKLTERLDDAGQEVSHMKKDTTLGDIVKIKR
K

Sequences:

>Translated_161_residues
MQCEICGAEIRGKPISVTIDNSELQVCQKCAPYGKPVDKRSPVSRKVSPVVRTVPRTEKRPKKDFFDILKDELLDDYDHI
IREAREARGWSQEDLAENIKEKASLIKKIERSEIVPEDSVRKKLEHALNIKLTERLDDAGQEVSHMKKDTTLGDIVKIKR
K
>Mature_161_residues
MQCEICGAEIRGKPISVTIDNSELQVCQKCAPYGKPVDKRSPVSRKVSPVVRTVPRTEKRPKKDFFDILKDELLDDYDHI
IREAREARGWSQEDLAENIKEKASLIKKIERSEIVPEDSVRKKLEHALNIKLTERLDDAGQEVSHMKKDTTLGDIVKIKR
K

Specific function: Unknown

COG id: COG1813

COG function: function code K; Predicted transcription factor, homolog of eukaryotic MBF1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004451
- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 18478; Mature: 18478

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQCEICGAEIRGKPISVTIDNSELQVCQKCAPYGKPVDKRSPVSRKVSPVVRTVPRTEKR
CCCCCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
PKKDFFDILKDELLDDYDHIIREAREARGWSQEDLAENIKEKASLIKKIERSEIVPEDSV
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
RKKLEHALNIKLTERLDDAGQEVSHMKKDTTLGDIVKIKRK
HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCC
>Mature Secondary Structure
MQCEICGAEIRGKPISVTIDNSELQVCQKCAPYGKPVDKRSPVSRKVSPVVRTVPRTEKR
CCCCCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
PKKDFFDILKDELLDDYDHIIREAREARGWSQEDLAENIKEKASLIKKIERSEIVPEDSV
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
RKKLEHALNIKLTERLDDAGQEVSHMKKDTTLGDIVKIKRK
HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]