| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21227085
Identifier: 21227085
GI number: 21227085
Start: 1161959
End: 1162567
Strand: Reverse
Name: 21227085
Synonym: MM_0983
Alternate gene names: NA
Gene position: 1162567-1161959 (Counterclockwise)
Preceding gene: 21227086
Following gene: 21227084
Centisome position: 28.38
GC content: 41.71
Gene sequence:
>609_bases ATGGAAATATTTATACCTGCAAAGTTTATTTATGATTGTAGTACCTATCGTGTTAAAGACCCCGGGAGAAAAAGTGTGCA GTGCGCGTTGTGCAGGAATAAGGAATGCCTGATAGGCAAAAACTGCTCTGTTATAAAATCGGGACTTGATTACAGCGGCG ATAACCTTAAGTCAATCCAGATTTCAGCCTGGCTTGAATCGGACCCTACCAAGAGAACAAAGCTAGAGGAAATTGCAATT TACTCGAAAAGGCTCGGGTACAGAAAGATAGGTATCGCTTTCTGTATCGAACATGAAAGGGAAGCAAGGCTTGTTTACGA CATCCTTTCAAGGTATTTCGATGTATTTTCAGTTTGCTGCAAGGTTTGCAGTATTGAAAAAGAAAGCCTGGATATCAGGA AAACCGTTGAATCGGAATTTGAGGCGGCCTGTAATCCCATAGGGCAGGCTCTTCTCCTTAATGATGACCGAACTGACCTC AATATTATGCTCGGTCTTAAAACAGGTTATGACATTCTATTCGCAAAATATTCGGAAGCCCCTTCAATAACGCTTCCTCT TCTGGAACTTCCCTCTACTGGGGATTCCGAGATCGATTTTATAGAATAA
Upstream 100 bases:
>100_bases TAATTTTTCCTTATTTTTCAATGAGATTTTTTTCTTTTTTCATTGAGCTTTTTTAATCTGGTTTGCTCATCATAAGCTCT CCAGTATATTTCTTTATTTT
Downstream 100 bases:
>100_bases AATTTAAATCTGGTGTAACTATTCAGGTAGAGCCTTTGAAAGGCTACAATTTTTCCTCTTTTCGAGGAAAAATTGCATAT AAATTGAATCCTATTTCCTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 202; Mature: 202
Protein sequence:
>202_residues MEIFIPAKFIYDCSTYRVKDPGRKSVQCALCRNKECLIGKNCSVIKSGLDYSGDNLKSIQISAWLESDPTKRTKLEEIAI YSKRLGYRKIGIAFCIEHEREARLVYDILSRYFDVFSVCCKVCSIEKESLDIRKTVESEFEAACNPIGQALLLNDDRTDL NIMLGLKTGYDILFAKYSEAPSITLPLLELPSTGDSEIDFIE
Sequences:
>Translated_202_residues MEIFIPAKFIYDCSTYRVKDPGRKSVQCALCRNKECLIGKNCSVIKSGLDYSGDNLKSIQISAWLESDPTKRTKLEEIAI YSKRLGYRKIGIAFCIEHEREARLVYDILSRYFDVFSVCCKVCSIEKESLDIRKTVESEFEAACNPIGQALLLNDDRTDL NIMLGLKTGYDILFAKYSEAPSITLPLLELPSTGDSEIDFIE >Mature_202_residues MEIFIPAKFIYDCSTYRVKDPGRKSVQCALCRNKECLIGKNCSVIKSGLDYSGDNLKSIQISAWLESDPTKRTKLEEIAI YSKRLGYRKIGIAFCIEHEREARLVYDILSRYFDVFSVCCKVCSIEKESLDIRKTVESEFEAACNPIGQALLLNDDRTDL NIMLGLKTGYDILFAKYSEAPSITLPLLELPSTGDSEIDFIE
Specific function: Unknown
COG id: COG4887
COG function: function code R; Uncharacterized metal-binding protein conserved in archaea
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014997 [H]
Pfam domain/function: PF08901 DUF1847 [H]
EC number: NA
Molecular weight: Translated: 22880; Mature: 22880
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
5.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 5.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEIFIPAKFIYDCSTYRVKDPGRKSVQCALCRNKECLIGKNCSVIKSGLDYSGDNLKSIQ CEEEECHHEEECCCCEEECCCCCCCEEEEEECCCCEEECCCHHHHHCCCCCCCCCEEEEE ISAWLESDPTKRTKLEEIAIYSKRLGYRKIGIAFCIEHEREARLVYDILSRYFDVFSVCC EEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHH KVCSIEKESLDIRKTVESEFEAACNPIGQALLLNDDRTDLNIMLGLKTGYDILFAKYSEA HHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEEEEECCCCEEEEEECCCC PSITLPLLELPSTGDSEIDFIE CCEEEEEEECCCCCCCCCCCCC >Mature Secondary Structure MEIFIPAKFIYDCSTYRVKDPGRKSVQCALCRNKECLIGKNCSVIKSGLDYSGDNLKSIQ CEEEECHHEEECCCCEEECCCCCCCEEEEEECCCCEEECCCHHHHHCCCCCCCCCEEEEE ISAWLESDPTKRTKLEEIAIYSKRLGYRKIGIAFCIEHEREARLVYDILSRYFDVFSVCC EEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHH KVCSIEKESLDIRKTVESEFEAACNPIGQALLLNDDRTDLNIMLGLKTGYDILFAKYSEA HHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEEEEECCCCEEEEEECCCC PSITLPLLELPSTGDSEIDFIE CCEEEEEEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]