| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
Click here to switch to the map view.
The map label for this gene is 21227077
Identifier: 21227077
GI number: 21227077
Start: 1155475
End: 1156014
Strand: Direct
Name: 21227077
Synonym: MM_0975
Alternate gene names: NA
Gene position: 1155475-1156014 (Clockwise)
Preceding gene: 21227075
Following gene: 21227079
Centisome position: 28.21
GC content: 44.26
Gene sequence:
>540_bases ATGCTCGGGAAATATGAAGACCTTGTTAAAAAAGCATCGGAAATAGGAATTAAGGCTTATTTCATGAAGGCAGGAGATAT TCCGGTTGAGAACCGGATTGCTCTTAAATGTGCTTACGGATGCAGAGGTTATGGCAAAAGGTTGAGTTGCCCTCCACACA TCATGTCAGTTGATGAATTCAGGAAGGTTATAAGGGAATACAGCAGTGCACTTCTCCTTGTAGAAGAGTTGGATACGTCA GGGATTCAGGACGTTCTTGAAGCGTGGTCAGGGCTTCGGAAGGATTCATTTCATAAGATGTTCGAGCTTGAGCAGGAAGC TTTCAGGGAAGGATTTACTTTTGCACATCTTCTCAGGCCAGGCTCCTGCAATGAATGTGAGACCTGTAACCTTGAAAAAT GTGTAAAACCTGAAATGAGGCGCTTTGCACCCGAAGCTGTTGGGATAAATGTCCAGAAAACAATGGAAGAAGCAGGAGTT ATGCTTGAGTTTTGCAGGCCTGACAGGGTTTCATGTGTGGGGATCTTACTTTTGGAGTGA
Upstream 100 bases:
>100_bases TTCAAAACAGAAAAAATAATTAGAAGAAAAACGAATTAAAGGGAAATAATAAGAGAAATAAACAAAAACAAAATAGATAA AGCTCTTAGAAGGGGTTATT
Downstream 100 bases:
>100_bases AAATCTTGCTGAATGAACCTGAGAATGAATCCCGGCAGGAAATTCACCCCTGGGATCGGTAAACTGCCTTTTCGCCTGAG AAGTCCCTTTACCTGTCTCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 179; Mature: 179
Protein sequence:
>179_residues MLGKYEDLVKKASEIGIKAYFMKAGDIPVENRIALKCAYGCRGYGKRLSCPPHIMSVDEFRKVIREYSSALLLVEELDTS GIQDVLEAWSGLRKDSFHKMFELEQEAFREGFTFAHLLRPGSCNECETCNLEKCVKPEMRRFAPEAVGINVQKTMEEAGV MLEFCRPDRVSCVGILLLE
Sequences:
>Translated_179_residues MLGKYEDLVKKASEIGIKAYFMKAGDIPVENRIALKCAYGCRGYGKRLSCPPHIMSVDEFRKVIREYSSALLLVEELDTS GIQDVLEAWSGLRKDSFHKMFELEQEAFREGFTFAHLLRPGSCNECETCNLEKCVKPEMRRFAPEAVGINVQKTMEEAGV MLEFCRPDRVSCVGILLLE >Mature_179_residues MLGKYEDLVKKASEIGIKAYFMKAGDIPVENRIALKCAYGCRGYGKRLSCPPHIMSVDEFRKVIREYSSALLLVEELDTS GIQDVLEAWSGLRKDSFHKMFELEQEAFREGFTFAHLLRPGSCNECETCNLEKCVKPEMRRFAPEAVGINVQKTMEEAGV MLEFCRPDRVSCVGILLLE
Specific function: Unknown
COG id: COG5423
COG function: function code S; Predicted metal-binding protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20296; Mature: 20296
Theoretical pI: Translated: 5.79; Mature: 5.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
5.0 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 8.9 %Cys+Met (Translated Protein) 5.0 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 8.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLGKYEDLVKKASEIGIKAYFMKAGDIPVENRIALKCAYGCRGYGKRLSCPPHIMSVDEF CCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHH RKVIREYSSALLLVEELDTSGIQDVLEAWSGLRKDSFHKMFELEQEAFREGFTFAHLLRP HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHEEHCCC GSCNECETCNLEKCVKPEMRRFAPEAVGINVQKTMEEAGVMLEFCRPDRVSCVGILLLE CCCCCCCCCCHHHHCCHHHHHHCCHHHCCCHHHHHHHHCCEEECCCCCCCCEEEEEEEC >Mature Secondary Structure MLGKYEDLVKKASEIGIKAYFMKAGDIPVENRIALKCAYGCRGYGKRLSCPPHIMSVDEF CCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHH RKVIREYSSALLLVEELDTSGIQDVLEAWSGLRKDSFHKMFELEQEAFREGFTFAHLLRP HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHEEHCCC GSCNECETCNLEKCVKPEMRRFAPEAVGINVQKTMEEAGVMLEFCRPDRVSCVGILLLE CCCCCCCCCCHHHHCCHHHHHHCCHHHCCCHHHHHHHHCCEEECCCCCCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA