| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21226872
Identifier: 21226872
GI number: 21226872
Start: 919540
End: 920364
Strand: Direct
Name: 21226872
Synonym: MM_0770
Alternate gene names: NA
Gene position: 919540-920364 (Clockwise)
Preceding gene: 21226871
Following gene: 21226874
Centisome position: 22.45
GC content: 44.61
Gene sequence:
>825_bases GTGGCTGGAAATATCTATGACCGGAATGAATTTGCCATAAAGTTCGTTGCTATAAATTACGGTAAAGAGTCATGGAATGA GGAAGAAATAAGGGCAGCAGAAAAGGTATGGCTTCTTGACTTCACAAGCGATAAAATGGAAGAATTCGCAGAGGTTTGCG GGTCCAAGCTGATATGGATAGATCACCACAGGACAGCTATGGAGAAATTTCCGGACCTGTGGACTTCGGAAAGCATTCCT GGAATAAGGTCCATTGAAAAGGCAGCCTGTGTACTTACATGGGAGTACACGCATCCAGATCATGTTTCACCTCCTGAAGC TGTCGCCTATATCGGGGATAAGGACATGTGGAGGTTTGAATACCCTGAGACCAGAGCTTTCAGTGCAGGCTTCAGTCTGA TGGTAAAAACCCCTGATGACCCATTATGGGACATGCTTCTCGGTTCCGGATATAAAGAAACCGTAAACAGAATGATATCA ATTGGTGAATTACTCCTGGAATCCCAGAATTACAAGCTTCAGAAAGCATTTGACCGGGGAGTGGATTATACTTTTCATAA CTGGAAAGCTAGGCTTGTTAACACCACAGGGAATATTTCCGAACTTGGAGAATTTATATACAGGAAGCCTGAATATGATA TTGCCGTAATGTGGCAGGCTGTAGAGGACATGATAGTATTCAGCCTGAGGTCTGACTCGGGAAATCCGGACTCACCCGAT TGTGCCAAAATTGCTCAGCAGTATGGCGGTGGAGGACATAAGAACGCAGCCGGGTTCCAGAAAAAGAATATAGATTTTCC AGGCCTGCTTTTTAGTCAGGTCTGA
Upstream 100 bases:
>100_bases AGGACATACTGTAAAACAAGGGGGAATAAAAATAACCGATAACAAATGTACCGTTTTAATTTATTACCATGATGATAATG ACGGATGCTGTTCGGCTGCA
Downstream 100 bases:
>100_bases AAATTGGAATTTACTCATTTTTTCAGGCTTAAAAAGAGAATAACTTATTATATAGGTTTCAAGGATATCGATTTTAAAAC TATCAATTTTAAAAAACTAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 274; Mature: 273
Protein sequence:
>274_residues MAGNIYDRNEFAIKFVAINYGKESWNEEEIRAAEKVWLLDFTSDKMEEFAEVCGSKLIWIDHHRTAMEKFPDLWTSESIP GIRSIEKAACVLTWEYTHPDHVSPPEAVAYIGDKDMWRFEYPETRAFSAGFSLMVKTPDDPLWDMLLGSGYKETVNRMIS IGELLLESQNYKLQKAFDRGVDYTFHNWKARLVNTTGNISELGEFIYRKPEYDIAVMWQAVEDMIVFSLRSDSGNPDSPD CAKIAQQYGGGGHKNAAGFQKKNIDFPGLLFSQV
Sequences:
>Translated_274_residues MAGNIYDRNEFAIKFVAINYGKESWNEEEIRAAEKVWLLDFTSDKMEEFAEVCGSKLIWIDHHRTAMEKFPDLWTSESIP GIRSIEKAACVLTWEYTHPDHVSPPEAVAYIGDKDMWRFEYPETRAFSAGFSLMVKTPDDPLWDMLLGSGYKETVNRMIS IGELLLESQNYKLQKAFDRGVDYTFHNWKARLVNTTGNISELGEFIYRKPEYDIAVMWQAVEDMIVFSLRSDSGNPDSPD CAKIAQQYGGGGHKNAAGFQKKNIDFPGLLFSQV >Mature_273_residues AGNIYDRNEFAIKFVAINYGKESWNEEEIRAAEKVWLLDFTSDKMEEFAEVCGSKLIWIDHHRTAMEKFPDLWTSESIPG IRSIEKAACVLTWEYTHPDHVSPPEAVAYIGDKDMWRFEYPETRAFSAGFSLMVKTPDDPLWDMLLGSGYKETVNRMISI GELLLESQNYKLQKAFDRGVDYTFHNWKARLVNTTGNISELGEFIYRKPEYDIAVMWQAVEDMIVFSLRSDSGNPDSPDC AKIAQQYGGGGHKNAAGFQKKNIDFPGLLFSQV
Specific function: Unknown
COG id: COG2404
COG function: function code R; Predicted phosphohydrolase (DHH superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31341; Mature: 31209
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGNIYDRNEFAIKFVAINYGKESWNEEEIRAAEKVWLLDFTSDKMEEFAEVCGSKLIWI CCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHEEEEEECCHHHHHHHHHHCCCEEEEE DHHRTAMEKFPDLWTSESIPGIRSIEKAACVLTWEYTHPDHVSPPEAVAYIGDKDMWRFE ECCHHHHHHCCCCCCCCCCCCHHHHHHEEEEEEEECCCCCCCCCHHHEEEECCCCCEEEE YPETRAFSAGFSLMVKTPDDPLWDMLLGSGYKETVNRMISIGELLLESQNYKLQKAFDRG CCCCCEECCCCEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCC VDYTFHNWKARLVNTTGNISELGEFIYRKPEYDIAVMWQAVEDMIVFSLRSDSGNPDSPD CCCEEECCEEEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHEEEEECCCCCCCCCH CAKIAQQYGGGGHKNAAGFQKKNIDFPGLLFSQV HHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCC >Mature Secondary Structure AGNIYDRNEFAIKFVAINYGKESWNEEEIRAAEKVWLLDFTSDKMEEFAEVCGSKLIWI CCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHEEEEEECCHHHHHHHHHHCCCEEEEE DHHRTAMEKFPDLWTSESIPGIRSIEKAACVLTWEYTHPDHVSPPEAVAYIGDKDMWRFE ECCHHHHHHCCCCCCCCCCCCHHHHHHEEEEEEEECCCCCCCCCHHHEEEECCCCCEEEE YPETRAFSAGFSLMVKTPDDPLWDMLLGSGYKETVNRMISIGELLLESQNYKLQKAFDRG CCCCCEECCCCEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCC VDYTFHNWKARLVNTTGNISELGEFIYRKPEYDIAVMWQAVEDMIVFSLRSDSGNPDSPD CCCEEECCEEEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHEEEEECCCCCCCCCH CAKIAQQYGGGGHKNAAGFQKKNIDFPGLLFSQV HHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA