| Definition | Methanosarcina mazei Go1 chromosome, complete genome. |
|---|---|
| Accession | NC_003901 |
| Length | 4,096,345 |
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The map label for this gene is 21226458
Identifier: 21226458
GI number: 21226458
Start: 462764
End: 463789
Strand: Direct
Name: 21226458
Synonym: MM_0356
Alternate gene names: NA
Gene position: 462764-463789 (Clockwise)
Preceding gene: 21226456
Following gene: 21226459
Centisome position: 11.3
GC content: 44.15
Gene sequence:
>1026_bases GTGACCCTCTGCGCTCCCTTAGTAATAAATACAGGTAAAAACCTGGTAATTCTTCCGGGACAGGGCCTGACTGAACAGTT CTATTCTGACATGGCAATATATTATGCCCAGCGTAAATACAGTGTATATATCCTGGACAGAAGAGAGACAAATATCCCGC CAGATGAAGACGATTTCAGTTTTATGGAGTACTGGACTGTTGAAGAACACCTGAATGACACATACATAGCTATCAATGCT TCAAGAAGCCATACTTCTTTCTTAAGCAAAAAACCTGCAGAAAATATAGAGGTTACAGCTATAGGCCACAGCCATGGAGC ATTAATCCTTACAGCTTATGAGGCAAGCCAGTATGATGACATGCCCCTGGGGTCTGTTGACAGGATAGTGCCTGTGGATA TTATCATTAAATACGACCCCCAGTATCCCGAGTTAATATATAATCAGACACAGGAATTTAATATTATTTCCAGTGAGATC GAAAATGAGGTCTATGAAGGCACTGGTATGGCTTCTATGATTTATGTAGCCAGCATGGCTTACTCAAATCCTGAAGGAAG TTCTCCTTACCCTGGGCTTACAAATATCCAGTTGTTCAGGCTCATGGCCAGTCAGACATATATTCTTTCCTCATATCCCT ACACTCCGGACTATCACTACTGGAGCGGGGACCTCAGCGGCCTTTCCTATGTCAATGAAAGCAGGTTACTCTATCTGACT CTGAGCGGAGGAGCTGCACCATTCACGCCAAAGTATATGGATCAATTCATGGCCGGGCTGATGGGCAATGTGGACGGGTA TGAAATAAACTCTTCCAGTGTGGATTCCCCAGTACTTTATGTTGGTCTCGGAGGAGGATTTGGCGATTACGGTTCCTGGT GGTATGAGAACGAGGCTGGGAATACGAACAGCAGAGTTACCTCTATGATCTGGAATAACCAGGGGCATGCCAGTCTGCTG ATCGATCAAAATTCTCCTGAATTATGGGCGCTTATAGATAACTGGATAAAAAACACAGAAACCTGA
Upstream 100 bases:
>100_bases ACAAGCTTATTTTACAAAAAAAGCAAGGATTAAGATATTTAAAGTGAAAAACGAAGAGGCGAGGGTTCACTTCATCCCCA CCCTAAAGGATGGGGTATTC
Downstream 100 bases:
>100_bases AAAAAAGGTAAAAATCCGAAAAAAATGAAATCGAGTAAAAAGAACCCTAAAGAGAAAAACATGAATTAAAGAAGAGAAAT GTCACTTGAAAGGAGAAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 341; Mature: 340
Protein sequence:
>341_residues MTLCAPLVINTGKNLVILPGQGLTEQFYSDMAIYYAQRKYSVYILDRRETNIPPDEDDFSFMEYWTVEEHLNDTYIAINA SRSHTSFLSKKPAENIEVTAIGHSHGALILTAYEASQYDDMPLGSVDRIVPVDIIIKYDPQYPELIYNQTQEFNIISSEI ENEVYEGTGMASMIYVASMAYSNPEGSSPYPGLTNIQLFRLMASQTYILSSYPYTPDYHYWSGDLSGLSYVNESRLLYLT LSGGAAPFTPKYMDQFMAGLMGNVDGYEINSSSVDSPVLYVGLGGGFGDYGSWWYENEAGNTNSRVTSMIWNNQGHASLL IDQNSPELWALIDNWIKNTET
Sequences:
>Translated_341_residues MTLCAPLVINTGKNLVILPGQGLTEQFYSDMAIYYAQRKYSVYILDRRETNIPPDEDDFSFMEYWTVEEHLNDTYIAINA SRSHTSFLSKKPAENIEVTAIGHSHGALILTAYEASQYDDMPLGSVDRIVPVDIIIKYDPQYPELIYNQTQEFNIISSEI ENEVYEGTGMASMIYVASMAYSNPEGSSPYPGLTNIQLFRLMASQTYILSSYPYTPDYHYWSGDLSGLSYVNESRLLYLT LSGGAAPFTPKYMDQFMAGLMGNVDGYEINSSSVDSPVLYVGLGGGFGDYGSWWYENEAGNTNSRVTSMIWNNQGHASLL IDQNSPELWALIDNWIKNTET >Mature_340_residues TLCAPLVINTGKNLVILPGQGLTEQFYSDMAIYYAQRKYSVYILDRRETNIPPDEDDFSFMEYWTVEEHLNDTYIAINAS RSHTSFLSKKPAENIEVTAIGHSHGALILTAYEASQYDDMPLGSVDRIVPVDIIIKYDPQYPELIYNQTQEFNIISSEIE NEVYEGTGMASMIYVASMAYSNPEGSSPYPGLTNIQLFRLMASQTYILSSYPYTPDYHYWSGDLSGLSYVNESRLLYLTL SGGAAPFTPKYMDQFMAGLMGNVDGYEINSSSVDSPVLYVGLGGGFGDYGSWWYENEAGNTNSRVTSMIWNNQGHASLLI DQNSPELWALIDNWIKNTET
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38326; Mature: 38195
Theoretical pI: Translated: 4.04; Mature: 4.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLCAPLVINTGKNLVILPGQGLTEQFYSDMAIYYAQRKYSVYILDRRETNIPPDEDDFS CCEEEEEEEECCCCEEEECCCCCHHHHHHCEEEEEEECEEEEEEEECCCCCCCCCCCCCC FMEYWTVEEHLNDTYIAINASRSHTSFLSKKPAENIEVTAIGHSHGALILTAYEASQYDD HHEEEEHHHHCCCEEEEEECCCCHHHHHHCCCCCCEEEEEEECCCCEEEEEEEECCCCCC MPLGSVDRIVPVDIIIKYDPQYPELIYNQTQEFNIISSEIENEVYEGTGMASMIYVASMA CCCCCCCCEEEEEEEEEECCCCCHHHHCCCCCCEEHHHHHHHHHHCCCCHHHHHHHHHHH YSNPEGSSPYPGLTNIQLFRLMASQTYILSSYPYTPDYHYWSGDLSGLSYVNESRLLYLT CCCCCCCCCCCCCCCHHHHHHHHCCEEEEECCCCCCCCCEECCCCCCCEEECCCEEEEEE LSGGAAPFTPKYMDQFMAGLMGNVDGYEINSSSVDSPVLYVGLGGGFGDYGSWWYENEAG ECCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCEEEEECCCCCCCCCCEEEECCCC NTNSRVTSMIWNNQGHASLLIDQNSPELWALIDNWIKNTET CCCCEEEEEEECCCCCEEEEEECCCCCCHHHHHHHHHCCCC >Mature Secondary Structure TLCAPLVINTGKNLVILPGQGLTEQFYSDMAIYYAQRKYSVYILDRRETNIPPDEDDFS CEEEEEEEECCCCEEEECCCCCHHHHHHCEEEEEEECEEEEEEEECCCCCCCCCCCCCC FMEYWTVEEHLNDTYIAINASRSHTSFLSKKPAENIEVTAIGHSHGALILTAYEASQYDD HHEEEEHHHHCCCEEEEEECCCCHHHHHHCCCCCCEEEEEEECCCCEEEEEEEECCCCCC MPLGSVDRIVPVDIIIKYDPQYPELIYNQTQEFNIISSEIENEVYEGTGMASMIYVASMA CCCCCCCCEEEEEEEEEECCCCCHHHHCCCCCCEEHHHHHHHHHHCCCCHHHHHHHHHHH YSNPEGSSPYPGLTNIQLFRLMASQTYILSSYPYTPDYHYWSGDLSGLSYVNESRLLYLT CCCCCCCCCCCCCCCHHHHHHHHCCEEEEECCCCCCCCCEECCCCCCCEEECCCEEEEEE LSGGAAPFTPKYMDQFMAGLMGNVDGYEINSSSVDSPVLYVGLGGGFGDYGSWWYENEAG ECCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCEEEEECCCCCCCCCCEEEECCCC NTNSRVTSMIWNNQGHASLLIDQNSPELWALIDNWIKNTET CCCCEEEEEEECCCCCEEEEEECCCCCCHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA