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The map label for this gene is rps6e

Identifier: 212225097

GI number: 212225097

Start: 1826415

End: 1826792

Strand: Reverse

Name: rps6e

Synonym: TON_1945

Alternate gene names: 212225097

Gene position: 1826792-1826415 (Counterclockwise)

Preceding gene: 212225099

Following gene: 212225096

Centisome position: 98.87

GC content: 56.35

Gene sequence:

>378_bases
ATGGCGACCTTTAAGCTTGTCATATCGAACCCGAAGAACGGGATAGCCAGGCAGGTCGAGATAAGCGGCGAAGAGGCAGA
GAAGCTCATCGGAAAGAGGATCGGAGAGGAGATCTCCGCCAAGGAGCTTGGCCTCAACCTCACCGAGATATTCGGCGAGG
AGATTCCAGCCGATACCAAGCTCAAGATAACCGGCGGAACCGACAAGGATGGCTTCCCCATGAGGCCCGATGTCCATGGT
CCGAGGAGGGTCAAGATCCTCGTCTCTAGGGGGCCGGGTTTCAGGCCTAAGGAGAAGGGTGAGAGGAGGAAGAAGACCGT
TAGGGGCAACACCATCAGCCCCGAGATCGTCCAGATCAACATGAAGCTCGTCTTCTGA

Upstream 100 bases:

>100_bases
AGTTTTGATAGGGGAAACTTTTTAAAAGGTAATCCACAGCCCATGGTGGATAAGGGGTTTCCCCAATGAATCCCGCTAAT
GACATAGGAGGTGGGAGGAA

Downstream 100 bases:

>100_bases
GCTTCCTCCTTTCCCCAACTTACTGCTTTTCTGCTTGCCTTGGAGTATGTCCTTCGAGTTCTTCCCCTGAGGTAACCTTA
ATAAATGCCCAAACTCTCTA

Product: 30S ribosomal protein S6e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 124

Protein sequence:

>125_residues
MATFKLVISNPKNGIARQVEISGEEAEKLIGKRIGEEISAKELGLNLTEIFGEEIPADTKLKITGGTDKDGFPMRPDVHG
PRRVKILVSRGPGFRPKEKGERRKKTVRGNTISPEIVQINMKLVF

Sequences:

>Translated_125_residues
MATFKLVISNPKNGIARQVEISGEEAEKLIGKRIGEEISAKELGLNLTEIFGEEIPADTKLKITGGTDKDGFPMRPDVHG
PRRVKILVSRGPGFRPKEKGERRKKTVRGNTISPEIVQINMKLVF
>Mature_124_residues
ATFKLVISNPKNGIARQVEISGEEAEKLIGKRIGEEISAKELGLNLTEIFGEEIPADTKLKITGGTDKDGFPMRPDVHGP
RRVKILVSRGPGFRPKEKGERRKKTVRGNTISPEIVQINMKLVF

Specific function: Unknown

COG id: COG2125

COG function: function code J; Ribosomal protein S6E (S10)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S6e family

Homologues:

Organism=Homo sapiens, GI17158044, Length=123, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6325167, Length=123, Percent_Identity=35.7723577235772, Blast_Score=70, Evalue=8e-14,
Organism=Saccharomyces cerevisiae, GI6319658, Length=123, Percent_Identity=35.7723577235772, Blast_Score=70, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS6E_THEON (B6YW70)

Other databases:

- EMBL:   CP000855
- RefSeq:   YP_002308333.1
- GeneID:   7017619
- GenomeReviews:   CP000855_GR
- KEGG:   ton:TON_1945
- HOGENOM:   HBG497422
- OMA:   DGFPMRP
- ProtClustDB:   PRK04290
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00512
- InterPro:   IPR001377
- InterPro:   IPR020924
- InterPro:   IPR018282
- PANTHER:   PTHR11502
- PANTHER:   PTHR11502:SF2

Pfam domain/function: PF01092 Ribosomal_S6e

EC number: NA

Molecular weight: Translated: 13850; Mature: 13719

Theoretical pI: Translated: 10.66; Mature: 10.66

Prosite motif: PS00578 RIBOSOMAL_S6E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATFKLVISNPKNGIARQVEISGEEAEKLIGKRIGEEISAKELGLNLTEIFGEEIPADTK
CCEEEEEEECCCCCCEEEEEECCHHHHHHHHHHHCCCCCHHHHCCCHHHHHHCCCCCCCE
LKITGGTDKDGFPMRPDVHGPRRVKILVSRGPGFRPKEKGERRKKTVRGNTISPEIVQIN
EEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEEEEE
MKLVF
EEEEC
>Mature Secondary Structure 
ATFKLVISNPKNGIARQVEISGEEAEKLIGKRIGEEISAKELGLNLTEIFGEEIPADTK
CEEEEEEECCCCCCEEEEEECCHHHHHHHHHHHCCCCCHHHHCCCHHHHHHCCCCCCCE
LKITGGTDKDGFPMRPDVHGPRRVKILVSRGPGFRPKEKGERRKKTVRGNTISPEIVQIN
EEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEEEEE
MKLVF
EEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA