Click here to switch to the map view.

The map label for this gene is 212225073

Identifier: 212225073

GI number: 212225073

Start: 1808140

End: 1808790

Strand: Reverse

Name: 212225073

Synonym: TON_1921

Alternate gene names: NA

Gene position: 1808790-1808140 (Counterclockwise)

Preceding gene: 212225074

Following gene: 212225072

Centisome position: 97.9

GC content: 46.85

Gene sequence:

>651_bases
ATGAACTCTTTTGAAGCATTTAAAAGGCTCTCACTGGAAATTGAAACTTCACGTGGAAGAACTCTTCTCATGGCAGATCC
GCATATAGGATTCGAGCTTTCCCGCGGGCTGAGGATAAGGACGCATTTCGAGGAGAGACTGGCTCAGTTCATAGTCGAAA
AGGACCCAGACTTGCTGGTTCTTCTGGGGGACGTTAAGGAGCCAATAGGGATGAGTTTCACCATGAAAAGACTCTTAATG
GGATTCTTTTCCGAACTGAAGGAAATTCCGACGATTATAACCAAGGGCAACCATGACGGAAGAATAGAGGAAGTTGCCGA
AAAGTTTCCGAACGTTGAGGTCAGGGAACACATCCTGACCGACGATATACTCCTTCTACACGGCCATACAAATCTGCCGA
AGGTAGAGTTCTGCGAGGCATATCTCGGCCACATTCATCCCGCATACACTTTCAAATCCGGAGGGGTAGCCAAGAAAACC
AAGATTTTCCTCAGGGTTGGAAGGTTCCTTATTCTACCTTCGGTGAACCCGTTCATTGAGGGCTTCGACGTGAGAGAAGG
TATAAAGATGATACCCTTCCTGAAAGACACCAAGAGTGGAAAAGCTTTTCTACCAGAAGGAATCTACGTGGGCGAAGTTC
CCTTCAGATAG

Upstream 100 bases:

>100_bases
AAGAAGAGGATCAGGCGCCTCAAGAGGCAGCGCAGGAAGGAGCGCGGACTCATCTGACGCCCTTCCATTCATTTTCTATT
GCTTCCTTTTTGGTGGTGCT

Downstream 100 bases:

>100_bases
GCAAGCTTTATTAATGTATATGAAGATAATATTTCATAGGTAGGATGAAAGTACATCAGGTGGTGTGAAATGAGCGACGT
CTATGAGAAGCTCGAGGCGC

Product: exonuclease SbcD

Products: NA

Alternate protein names: Exonuclease SbcD-Like Protein; Exonuclease SbcD Like Protein; Exonuclease SbcD Homolog; Exonuclease Sbcd

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MNSFEAFKRLSLEIETSRGRTLLMADPHIGFELSRGLRIRTHFEERLAQFIVEKDPDLLVLLGDVKEPIGMSFTMKRLLM
GFFSELKEIPTIITKGNHDGRIEEVAEKFPNVEVREHILTDDILLLHGHTNLPKVEFCEAYLGHIHPAYTFKSGGVAKKT
KIFLRVGRFLILPSVNPFIEGFDVREGIKMIPFLKDTKSGKAFLPEGIYVGEVPFR

Sequences:

>Translated_216_residues
MNSFEAFKRLSLEIETSRGRTLLMADPHIGFELSRGLRIRTHFEERLAQFIVEKDPDLLVLLGDVKEPIGMSFTMKRLLM
GFFSELKEIPTIITKGNHDGRIEEVAEKFPNVEVREHILTDDILLLHGHTNLPKVEFCEAYLGHIHPAYTFKSGGVAKKT
KIFLRVGRFLILPSVNPFIEGFDVREGIKMIPFLKDTKSGKAFLPEGIYVGEVPFR
>Mature_216_residues
MNSFEAFKRLSLEIETSRGRTLLMADPHIGFELSRGLRIRTHFEERLAQFIVEKDPDLLVLLGDVKEPIGMSFTMKRLLM
GFFSELKEIPTIITKGNHDGRIEEVAEKFPNVEVREHILTDDILLLHGHTNLPKVEFCEAYLGHIHPAYTFKSGGVAKKT
KIFLRVGRFLILPSVNPFIEGFDVREGIKMIPFLKDTKSGKAFLPEGIYVGEVPFR

Specific function: Unknown

COG id: COG1407

COG function: function code R; Predicted ICC-like phosphoesterases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24639; Mature: 24639

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSFEAFKRLSLEIETSRGRTLLMADPHIGFELSRGLRIRTHFEERLAQFIVEKDPDLLV
CCHHHHHHHHEEEEECCCCCEEEEECCCCCEECCCCCEEEHHHHHHHHHHHHCCCCCEEE
LLGDVKEPIGMSFTMKRLLMGFFSELKEIPTIITKGNHDGRIEEVAEKFPNVEVREHILT
EECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHCCCCHHHHHHCC
DDILLLHGHTNLPKVEFCEAYLGHIHPAYTFKSGGVAKKTKIFLRVGRFLILPSVNPFIE
CCEEEEECCCCCCHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHCCEEEECCCCHHHC
GFDVREGIKMIPFLKDTKSGKAFLPEGIYVGEVPFR
CCCHHCCCEECCEEECCCCCCEECCCCEEECCCCCC
>Mature Secondary Structure
MNSFEAFKRLSLEIETSRGRTLLMADPHIGFELSRGLRIRTHFEERLAQFIVEKDPDLLV
CCHHHHHHHHEEEEECCCCCEEEEECCCCCEECCCCCEEEHHHHHHHHHHHHCCCCCEEE
LLGDVKEPIGMSFTMKRLLMGFFSELKEIPTIITKGNHDGRIEEVAEKFPNVEVREHILT
EECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHCCCCHHHHHHCC
DDILLLHGHTNLPKVEFCEAYLGHIHPAYTFKSGGVAKKTKIFLRVGRFLILPSVNPFIE
CCEEEEECCCCCCHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHCCEEEECCCCHHHC
GFDVREGIKMIPFLKDTKSGKAFLPEGIYVGEVPFR
CCCHHCCCEECCEEECCCCCCEECCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA