| Definition | Thermococcus onnurineus NA1, complete genome. |
|---|---|
| Accession | NC_011529 |
| Length | 1,847,607 |
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The map label for this gene is nrdZ [H]
Identifier: 212224967
GI number: 212224967
Start: 1689494
End: 1692226
Strand: Reverse
Name: nrdZ [H]
Synonym: TON_1816
Alternate gene names: 212224967
Gene position: 1692226-1689494 (Counterclockwise)
Preceding gene: 212224968
Following gene: 212224966
Centisome position: 91.59
GC content: 53.71
Gene sequence:
>2733_bases ATGGCCGTTGAAAAAGTGATGAAAAGGGACGGCAGGATTGTCCCATTTGATAAAGAGCGTATAAAATGGGCTATCCAAAG GGCAATGCTTGAAGTCGGTGTCCGTGACGAGAAGCTTCTCAACAGGGTCGTTAGAAGGGTCGTCAAAAGGGTGAACGAGC TCTACGACGGGCAGGTGCCTCACATAGAGAACATCCAGGATATAGTCGAGCTCGAGCTGATGAGAGTTGGTCTCTTCGAC GTCGCCAAGGCCTACATCCTCTACCGTAAGAAGAAGGCCGAGATCAGGGAGGAAAAGAAGAAGATACTCAACAAAGACAA GCTCGACGAGATAGACAAGCGCTTCTCCATCAATGCCCTCCGCGTTTTGGCTTCTCGCTACCTTATCAGGAACGAGAAAG GAGAAATAATTGAGAGCCCGAGGGAGCTCTTTGAGAGGGTTGCGACTCTGGTGGTCATCCCTGATCTGCTCTACGATGAG AGGGTCTTCGACAGGGAAGGAAACCACGAGCAGGACCTAAGTAATGTCGAGAAATACATGGAGAAGCTCGACGAGTACGA TAGAAAACTCTCAATCGGCAGGTTCAAGCTCAACAAGTACCACTTCGAAAGGCTCCTCAACCTCTACCGCGAGCTCGCCC AGAAGGGCCAGATGAAGGTCTCCATAGACGAAGTCATCGGGATGCTCGAGAACGGAGCCTTTGACAAGTACGAGGACGAA ATAGAGGAGTACTTCCGCCTGATGACGAGCCAGACCTTCATGCCGAACACGCCGGCCCTCATAAACTCAGGAAGGCCGCT CGGGATGCTCTCAGCGTGCTTCGTCGTTCCGATAGAGGACGACATGGAGAGCATAATGAAGGCAGCACACGATGTAGCAA TGATACAGAAGATGGGTGGCGGTACCGGTTTGAACTTCTCCAAACTCCGCCCGGAGGGTGATTTAGTCGGAACCACCACT GGAGCGGCATCTGGCCCTGTCAGCTTCATGCACCTCATCGATGCCGTCAGCGACGTGATAAAGCAGGGTGGAGTGAGAAG AGGCGCGAACATGGGCATCCTCGAAGTCTGGCACCCTGACATCGAGAAGTTCATCCACGCCAAAGAGAAGAACATCGGAA CGAACGTTTTAGCAAACTTCAACATCAGCGTGGGCATATGGTCCGACTTCTGGGAAGCTCTGAGAGAAGGCAAGCGCTAT CCGCTCATCAACCCAAGGACTGGCGAGAAGGTCAAGGAGATTGACCCGAAGAGCCTCTTCGAGGAGTTAGCATTTATGGC CTGGGCCAAGGCCGATCCGGGAGTTATATTCTTCGATGTCATCAACAGGAGGAACGTCTTAGAGCCCGCAAAAGGTGAAA AGATACGCGCGACCAACCCCTGCGGAGAAGAGCCCCTCTATGAGTACGAATCCTGTAATTTAGCCAGCATAAACCTCGCC AAATTCGTCAAGTACGATGAAGAAGGCAAGCCCTACTTCGATTGGGACGAGTACGCCTATGTAATCCAGAAGGTCGCCAA GTACCTCGACAACGCAATCGACGTCAACAAGTTCCCGCTCCCTGAGATAGACTACAACACCAAGCTGACGAGGAGGATAG GCGTCGGAATGATGGGCCTGGCCGATGCCCTCTTCAAGCTCGGCATAGCCTACAACAGCAAGGAAGGCTACGACTTCATG AGAAAGGCAACAGAGTACCTTACCTTCTACGCCTACAAGTACAGCGTCGAAGCAGCTAAAAAGCGCGGACCCTTCCCGCT CTACGAGAAGACGAGGTACAAGGATGGCGAGCTTCCGGTCGAGGGCTACTACCACAGGGAGGTCTGGACACTCCCATGGG ACGAGCTGGTTGAGGAGATCAAGAAGTACGGCGTCAGGAACGGAATGGTGACCACCTGTCCGCCCACCGGCTCGGTCAGC ATGATAGCCGATACCTCCAGCGGCATAGAACCCATCTTTGCCCTCGTCTACAAGAAGAGCGTCACCGTTGGCGAGTTTTA CTACGTTGACCCTGTCTTCGAGGCTGAGCTGAAGAAGCGCGGTCTCTGGAGCGACGAGCTGCTGAGGAAGATAAGCGATA ACTACGGAAGTGTCCAGGGCCTCGAAGAAATCCCCGAGGACATGCAGCGCGTTTTCGTCACCTCGATGGACATACACTGG CTCGACCACATACTGGCTCAGGCCAACATCCAGCTCTGGCTCACCGATTCAGCGAGCAAGACAATCAACATGCCGAACGA CGCCACCGTCGAGGACGTTAAAGCTGCATACCTCCTCGCATACAAGCTCGGCTGCAAGGGCATAACCGTCTATCGCGACG GCTCGCTCAGCGTTCAGGTCTACAGCGTCGAGGGAGAAAAGAGGCAGCGCGTCAAGGCCAAGCCAAGCGCTTACGCTGTC GAGAAGCTCAAGGCCGTCGTTGAGGCCGAGCCATGGCTGACCAAGTTCATCAACATCGAAGGCATACTCAACGGCACCAA CGGCAAGAAAAAGGAGGAAGCCCCAGCACCCAATTTTTCCCTGAGCATGACAAAGACCCTTAAACCCGAAGCCCACGAGC ATCCACATCATAGGGAGCCGCCGGAGATTCCCGAGGAGAAGATAAAAGAGCTCTTAGGGGTCACTTACTGTCCAGTCTGC TATGAGAAGGACGGAAAGCTCGTTGAGCTGAAAATGGAGAGTGGTTGCGCCACCTGTCCTGTCTGTGGCTGGAGCAAGTG CGTCATTGGATGA
Upstream 100 bases:
>100_bases CTACCGGGGTAAGGTATATGTAGGGTGACAGCCACAAAGCCGTGCTGATGCTTCTACTAACAGGGGCAACGATAAACAAC TGTACGTCAGGGGTGTTTAT
Downstream 100 bases:
>100_bases ATTCTCCCCTTTTTTCTTATGCTTTGACATCTCTCTGTTAACGGAGGCTTTTTAAGTCTATATATTTAACTTCTTGCCAT CAGACGAAAGCCTTAAATTG
Product: ribonucleotide reductase alpha subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 910; Mature: 909
Protein sequence:
>910_residues MAVEKVMKRDGRIVPFDKERIKWAIQRAMLEVGVRDEKLLNRVVRRVVKRVNELYDGQVPHIENIQDIVELELMRVGLFD VAKAYILYRKKKAEIREEKKKILNKDKLDEIDKRFSINALRVLASRYLIRNEKGEIIESPRELFERVATLVVIPDLLYDE RVFDREGNHEQDLSNVEKYMEKLDEYDRKLSIGRFKLNKYHFERLLNLYRELAQKGQMKVSIDEVIGMLENGAFDKYEDE IEEYFRLMTSQTFMPNTPALINSGRPLGMLSACFVVPIEDDMESIMKAAHDVAMIQKMGGGTGLNFSKLRPEGDLVGTTT GAASGPVSFMHLIDAVSDVIKQGGVRRGANMGILEVWHPDIEKFIHAKEKNIGTNVLANFNISVGIWSDFWEALREGKRY PLINPRTGEKVKEIDPKSLFEELAFMAWAKADPGVIFFDVINRRNVLEPAKGEKIRATNPCGEEPLYEYESCNLASINLA KFVKYDEEGKPYFDWDEYAYVIQKVAKYLDNAIDVNKFPLPEIDYNTKLTRRIGVGMMGLADALFKLGIAYNSKEGYDFM RKATEYLTFYAYKYSVEAAKKRGPFPLYEKTRYKDGELPVEGYYHREVWTLPWDELVEEIKKYGVRNGMVTTCPPTGSVS MIADTSSGIEPIFALVYKKSVTVGEFYYVDPVFEAELKKRGLWSDELLRKISDNYGSVQGLEEIPEDMQRVFVTSMDIHW LDHILAQANIQLWLTDSASKTINMPNDATVEDVKAAYLLAYKLGCKGITVYRDGSLSVQVYSVEGEKRQRVKAKPSAYAV EKLKAVVEAEPWLTKFINIEGILNGTNGKKKEEAPAPNFSLSMTKTLKPEAHEHPHHREPPEIPEEKIKELLGVTYCPVC YEKDGKLVELKMESGCATCPVCGWSKCVIG
Sequences:
>Translated_910_residues MAVEKVMKRDGRIVPFDKERIKWAIQRAMLEVGVRDEKLLNRVVRRVVKRVNELYDGQVPHIENIQDIVELELMRVGLFD VAKAYILYRKKKAEIREEKKKILNKDKLDEIDKRFSINALRVLASRYLIRNEKGEIIESPRELFERVATLVVIPDLLYDE RVFDREGNHEQDLSNVEKYMEKLDEYDRKLSIGRFKLNKYHFERLLNLYRELAQKGQMKVSIDEVIGMLENGAFDKYEDE IEEYFRLMTSQTFMPNTPALINSGRPLGMLSACFVVPIEDDMESIMKAAHDVAMIQKMGGGTGLNFSKLRPEGDLVGTTT GAASGPVSFMHLIDAVSDVIKQGGVRRGANMGILEVWHPDIEKFIHAKEKNIGTNVLANFNISVGIWSDFWEALREGKRY PLINPRTGEKVKEIDPKSLFEELAFMAWAKADPGVIFFDVINRRNVLEPAKGEKIRATNPCGEEPLYEYESCNLASINLA KFVKYDEEGKPYFDWDEYAYVIQKVAKYLDNAIDVNKFPLPEIDYNTKLTRRIGVGMMGLADALFKLGIAYNSKEGYDFM RKATEYLTFYAYKYSVEAAKKRGPFPLYEKTRYKDGELPVEGYYHREVWTLPWDELVEEIKKYGVRNGMVTTCPPTGSVS MIADTSSGIEPIFALVYKKSVTVGEFYYVDPVFEAELKKRGLWSDELLRKISDNYGSVQGLEEIPEDMQRVFVTSMDIHW LDHILAQANIQLWLTDSASKTINMPNDATVEDVKAAYLLAYKLGCKGITVYRDGSLSVQVYSVEGEKRQRVKAKPSAYAV EKLKAVVEAEPWLTKFINIEGILNGTNGKKKEEAPAPNFSLSMTKTLKPEAHEHPHHREPPEIPEEKIKELLGVTYCPVC YEKDGKLVELKMESGCATCPVCGWSKCVIG >Mature_909_residues AVEKVMKRDGRIVPFDKERIKWAIQRAMLEVGVRDEKLLNRVVRRVVKRVNELYDGQVPHIENIQDIVELELMRVGLFDV AKAYILYRKKKAEIREEKKKILNKDKLDEIDKRFSINALRVLASRYLIRNEKGEIIESPRELFERVATLVVIPDLLYDER VFDREGNHEQDLSNVEKYMEKLDEYDRKLSIGRFKLNKYHFERLLNLYRELAQKGQMKVSIDEVIGMLENGAFDKYEDEI EEYFRLMTSQTFMPNTPALINSGRPLGMLSACFVVPIEDDMESIMKAAHDVAMIQKMGGGTGLNFSKLRPEGDLVGTTTG AASGPVSFMHLIDAVSDVIKQGGVRRGANMGILEVWHPDIEKFIHAKEKNIGTNVLANFNISVGIWSDFWEALREGKRYP LINPRTGEKVKEIDPKSLFEELAFMAWAKADPGVIFFDVINRRNVLEPAKGEKIRATNPCGEEPLYEYESCNLASINLAK FVKYDEEGKPYFDWDEYAYVIQKVAKYLDNAIDVNKFPLPEIDYNTKLTRRIGVGMMGLADALFKLGIAYNSKEGYDFMR KATEYLTFYAYKYSVEAAKKRGPFPLYEKTRYKDGELPVEGYYHREVWTLPWDELVEEIKKYGVRNGMVTTCPPTGSVSM IADTSSGIEPIFALVYKKSVTVGEFYYVDPVFEAELKKRGLWSDELLRKISDNYGSVQGLEEIPEDMQRVFVTSMDIHWL DHILAQANIQLWLTDSASKTINMPNDATVEDVKAAYLLAYKLGCKGITVYRDGSLSVQVYSVEGEKRQRVKAKPSAYAVE KLKAVVEAEPWLTKFINIEGILNGTNGKKKEEAPAPNFSLSMTKTLKPEAHEHPHHREPPEIPEEKIKELLGVTYCPVCY EKDGKLVELKMESGCATCPVCGWSKCVIG
Specific function: Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides [H]
COG id: COG0209
COG function: function code F; Ribonucleotide reductase, alpha subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ATP-cone domain [H]
Homologues:
Organism=Homo sapiens, GI4506749, Length=568, Percent_Identity=27.6408450704225, Blast_Score=213, Evalue=7e-55, Organism=Escherichia coli, GI1789030, Length=605, Percent_Identity=25.4545454545455, Blast_Score=173, Evalue=4e-44, Organism=Escherichia coli, GI2367133, Length=470, Percent_Identity=24.468085106383, Blast_Score=121, Evalue=2e-28, Organism=Caenorhabditis elegans, GI17555242, Length=629, Percent_Identity=26.8680445151033, Blast_Score=222, Evalue=9e-58, Organism=Saccharomyces cerevisiae, GI6322123, Length=737, Percent_Identity=24.4233378561737, Blast_Score=209, Evalue=1e-54, Organism=Saccharomyces cerevisiae, GI6320914, Length=729, Percent_Identity=24.4170096021948, Blast_Score=202, Evalue=1e-52, Organism=Drosophila melanogaster, GI17352481, Length=695, Percent_Identity=26.3309352517986, Blast_Score=199, Evalue=6e-51,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005144 - InterPro: IPR013344 - InterPro: IPR013509 - InterPro: IPR000788 - InterPro: IPR008926 [H]
Pfam domain/function: PF03477 ATP-cone; PF02867 Ribonuc_red_lgC; PF00317 Ribonuc_red_lgN [H]
EC number: =1.17.4.1 [H]
Molecular weight: Translated: 104013; Mature: 103882
Theoretical pI: Translated: 6.22; Mature: 6.22
Prosite motif: PS51161 ATP_CONE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVEKVMKRDGRIVPFDKERIKWAIQRAMLEVGVRDEKLLNRVVRRVVKRVNELYDGQVP CCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC HIENIQDIVELELMRVGLFDVAKAYILYRKKKAEIREEKKKILNKDKLDEIDKRFSINAL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH RVLASRYLIRNEKGEIIESPRELFERVATLVVIPDLLYDERVFDREGNHEQDLSNVEKYM HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH EKLDEYDRKLSIGRFKLNKYHFERLLNLYRELAQKGQMKVSIDEVIGMLENGAFDKYEDE HHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHCCCCCHHHHH IEEYFRLMTSQTFMPNTPALINSGRPLGMLSACFVVPIEDDMESIMKAAHDVAMIQKMGG HHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHEEEEEECHHHHHHHHHHHHHHHHHHHCCC GTGLNFSKLRPEGDLVGTTTGAASGPVSFMHLIDAVSDVIKQGGVRRGANMGILEVWHPD CCCCCHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCC IEKFIHAKEKNIGTNVLANFNISVGIWSDFWEALREGKRYPLINPRTGEKVKEIDPKSLF HHHHHHHHHCCCCCCEEEEEEEEEECHHHHHHHHHCCCCCCCCCCCCCCHHHHCCHHHHH EELAFMAWAKADPGVIFFDVINRRNVLEPAKGEKIRATNPCGEEPLYEYESCNLASINLA HHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEHHH KFVKYDEEGKPYFDWDEYAYVIQKVAKYLDNAIDVNKFPLPEIDYNTKLTRRIGVGMMGL HHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCHHHH ADALFKLGIAYNSKEGYDFMRKATEYLTFYAYKYSVEAAKKRGPFPLYEKTRYKDGELPV HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEEEEHHHHHCCCCCCCCCCCCCCCCCCCC EGYYHREVWTLPWDELVEEIKKYGVRNGMVTTCPPTGSVSMIADTSSGIEPIFALVYKKS CCEEECEEECCCHHHHHHHHHHCCCCCCEEEECCCCCCEEEEECCCCCHHHHHHHHHHCC VTVGEFYYVDPVFEAELKKRGLWSDELLRKISDNYGSVQGLEEIPEDMQRVFVTSMDIHW CCCCEEEEECCHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCHHHH LDHILAQANIQLWLTDSASKTINMPNDATVEDVKAAYLLAYKLGCKGITVYRDGSLSVQV HHHHHHHCCEEEEEECCCCCEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCEEEEE YSVEGEKRQRVKAKPSAYAVEKLKAVVEAEPWLTKFINIEGILNGTNGKKKEEAPAPNFS EEECCCHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHEEEEEEEECCCCCCCCCCCCCCCE LSMTKTLKPEAHEHPHHREPPEIPEEKIKELLGVTYCPVCYEKDGKLVELKMESGCATCP EEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCEECCEEECCCCCEEEEEECCCCCCCC VCGWSKCVIG CCCCCHHCCC >Mature Secondary Structure AVEKVMKRDGRIVPFDKERIKWAIQRAMLEVGVRDEKLLNRVVRRVVKRVNELYDGQVP CHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC HIENIQDIVELELMRVGLFDVAKAYILYRKKKAEIREEKKKILNKDKLDEIDKRFSINAL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH RVLASRYLIRNEKGEIIESPRELFERVATLVVIPDLLYDERVFDREGNHEQDLSNVEKYM HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH EKLDEYDRKLSIGRFKLNKYHFERLLNLYRELAQKGQMKVSIDEVIGMLENGAFDKYEDE HHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHCCCCCHHHHH IEEYFRLMTSQTFMPNTPALINSGRPLGMLSACFVVPIEDDMESIMKAAHDVAMIQKMGG HHHHHHHHHCCCCCCCCCHHHCCCCCCCHHHEEEEEECHHHHHHHHHHHHHHHHHHHCCC GTGLNFSKLRPEGDLVGTTTGAASGPVSFMHLIDAVSDVIKQGGVRRGANMGILEVWHPD CCCCCHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCC IEKFIHAKEKNIGTNVLANFNISVGIWSDFWEALREGKRYPLINPRTGEKVKEIDPKSLF HHHHHHHHHCCCCCCEEEEEEEEEECHHHHHHHHHCCCCCCCCCCCCCCHHHHCCHHHHH EELAFMAWAKADPGVIFFDVINRRNVLEPAKGEKIRATNPCGEEPLYEYESCNLASINLA HHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEHHH KFVKYDEEGKPYFDWDEYAYVIQKVAKYLDNAIDVNKFPLPEIDYNTKLTRRIGVGMMGL HHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCHHHH ADALFKLGIAYNSKEGYDFMRKATEYLTFYAYKYSVEAAKKRGPFPLYEKTRYKDGELPV HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEEEEHHHHHCCCCCCCCCCCCCCCCCCCC EGYYHREVWTLPWDELVEEIKKYGVRNGMVTTCPPTGSVSMIADTSSGIEPIFALVYKKS CCEEECEEECCCHHHHHHHHHHCCCCCCEEEECCCCCCEEEEECCCCCHHHHHHHHHHCC VTVGEFYYVDPVFEAELKKRGLWSDELLRKISDNYGSVQGLEEIPEDMQRVFVTSMDIHW CCCCEEEEECCHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCHHHH LDHILAQANIQLWLTDSASKTINMPNDATVEDVKAAYLLAYKLGCKGITVYRDGSLSVQV HHHHHHHCCEEEEEECCCCCEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCEEEEE YSVEGEKRQRVKAKPSAYAVEKLKAVVEAEPWLTKFINIEGILNGTNGKKKEEAPAPNFS EEECCCHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHEEEEEEEECCCCCCCCCCCCCCCE LSMTKTLKPEAHEHPHHREPPEIPEEKIKELLGVTYCPVCYEKDGKLVELKMESGCATCP EEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCEECCEEECCCCCEEEEEECCCCCCCC VCGWSKCVIG CCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]