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The map label for this gene is 212224964

Identifier: 212224964

GI number: 212224964

Start: 1685139

End: 1685693

Strand: Reverse

Name: 212224964

Synonym: TON_1813

Alternate gene names: NA

Gene position: 1685693-1685139 (Counterclockwise)

Preceding gene: 212224965

Following gene: 212224963

Centisome position: 91.24

GC content: 53.69

Gene sequence:

>555_bases
ATGAGGGCGTTCATAGCCATTGAAGTTGGTGACAAGGTGAGGGACAACCTCCTGAAAGCTCAGGAAAGGATTGGAAATAA
AGCGGCGAAGATAAAGTTCGTTGAGAGGGAGAACTTCCACGTCACGCTCAAGTTCCTCGGCGAGATCGACGAGGCAACCG
CCGAAGAAGTGAAGAGGGCTTTGGCAGAAATAGCGAAGAAGCACAAAAAGCACAGGGTCAGGGTCAAGGGAATCGGCCTC
TTCCCAAACCCGAACTACGTCCGCGTCATCTGGGCTGGAATAGAGAACGACGAGGGCATTAAGGCCATAGCAAACGACGT
TGAACGCGAGATGAGGAGGCTGGGCTTCAAGAAGGACAAAGACTTCGTCGCCCACATCACAATCGGTCGCGTCAAGTTCG
TGAGGGACAAGCTGGAACTGGCGATGGCGCTGAAGGATCTGGCAAACGAGGACTTCGGAGAGTTTGAGGTCGACGCTATA
GAACTGAAGAAAAGCACGCTCACCCCCAAGGGCCCGATTTACGAGACCGTGGCGAGGTTTGAACTGGCGGAGTGA

Upstream 100 bases:

>100_bases
CATCTTAAGCTTATGAAATTCTCCCAAGGTCTACCTATTGTTCCAATCACTCAGGAAAACTGATTTAACTTCCCAATTCT
TTCTGGTATCAGGTGGTGTT

Downstream 100 bases:

>100_bases
TGGTAATGGTTCAAGAAGTTATTGGGGAAGTCCTCGTCAGGATCAGGCCGAACGAAGAGGAGAGGGCTTTTATTGAAGGC
CTGATGCGAGAGATCGAGAA

Product: 2'-5' RNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MRAFIAIEVGDKVRDNLLKAQERIGNKAAKIKFVERENFHVTLKFLGEIDEATAEEVKRALAEIAKKHKKHRVRVKGIGL
FPNPNYVRVIWAGIENDEGIKAIANDVEREMRRLGFKKDKDFVAHITIGRVKFVRDKLELAMALKDLANEDFGEFEVDAI
ELKKSTLTPKGPIYETVARFELAE

Sequences:

>Translated_184_residues
MRAFIAIEVGDKVRDNLLKAQERIGNKAAKIKFVERENFHVTLKFLGEIDEATAEEVKRALAEIAKKHKKHRVRVKGIGL
FPNPNYVRVIWAGIENDEGIKAIANDVEREMRRLGFKKDKDFVAHITIGRVKFVRDKLELAMALKDLANEDFGEFEVDAI
ELKKSTLTPKGPIYETVARFELAE
>Mature_184_residues
MRAFIAIEVGDKVRDNLLKAQERIGNKAAKIKFVERENFHVTLKFLGEIDEATAEEVKRALAEIAKKHKKHRVRVKGIGL
FPNPNYVRVIWAGIENDEGIKAIANDVEREMRRLGFKKDKDFVAHITIGRVKFVRDKLELAMALKDLANEDFGEFEVDAI
ELKKSTLTPKGPIYETVARFELAE

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0097 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004175
- InterPro:   IPR014051
- InterPro:   IPR009097 [H]

Pfam domain/function: PF02834 2_5_RNA_ligase [H]

EC number: NA

Molecular weight: Translated: 21017; Mature: 21017

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAFIAIEVGDKVRDNLLKAQERIGNKAAKIKFVERENFHVTLKFLGEIDEATAEEVKRA
CCEEEEEEECCHHHHHHHHHHHHHCCHHHEEEEEECCCCEEEEEECCCCCHHHHHHHHHH
LAEIAKKHKKHRVRVKGIGLFPNPNYVRVIWAGIENDEGIKAIANDVEREMRRLGFKKDK
HHHHHHHHHHCEEEEEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCC
DFVAHITIGRVKFVRDKLELAMALKDLANEDFGEFEVDAIELKKSTLTPKGPIYETVARF
CEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHEEEHHHCCCCCCCHHHHHHHH
ELAE
HCCC
>Mature Secondary Structure
MRAFIAIEVGDKVRDNLLKAQERIGNKAAKIKFVERENFHVTLKFLGEIDEATAEEVKRA
CCEEEEEEECCHHHHHHHHHHHHHCCHHHEEEEEECCCCEEEEEECCCCCHHHHHHHHHH
LAEIAKKHKKHRVRVKGIGLFPNPNYVRVIWAGIENDEGIKAIANDVEREMRRLGFKKDK
HHHHHHHHHHCEEEEEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCC
DFVAHITIGRVKFVRDKLELAMALKDLANEDFGEFEVDAIELKKSTLTPKGPIYETVARF
CEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHEEEHHHCCCCCCCHHHHHHHH
ELAE
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]