| Definition | Thermococcus onnurineus NA1, complete genome. |
|---|---|
| Accession | NC_011529 |
| Length | 1,847,607 |
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The map label for this gene is 212224692
Identifier: 212224692
GI number: 212224692
Start: 1413601
End: 1414923
Strand: Reverse
Name: 212224692
Synonym: TON_1541
Alternate gene names: NA
Gene position: 1414923-1413601 (Counterclockwise)
Preceding gene: 212224693
Following gene: 212224691
Centisome position: 76.58
GC content: 54.42
Gene sequence:
>1323_bases ATGCTCCCCCTCTCGGATATTTTAATTTGGTCGCTGGCCGGAGTGCTCTTCGGCTCGCTTATATCATGGATTCCGGGATT CCATATCTTCAACATCATGGCCCTGCTCGTGGCAGTCTTCGGGGTCGGCGAGCTCATGCCCGTCCAGGCCTTTCCATTCT TTGCTATAGGGGCCATAGTAGCTTACGCCTACGTCAGTGCAATATCGAGCGTCTACTTCAGCGTTGCTGACGAAAGCGCC GTCTTCCTGCTCTTCCCCACGCAGAGGTACCTCCTCCTTGGCAGAGGACATGAGGCGGTACTGCTGTACCTCATTGGCGC GGTTGCTGGAACGCTTATACTGGTCATAGGCGCCCTCTTCATCTTCCCGAAGGTACTTCCGCCGATATACCAGGCGACCA GTCCGTACATCACCTACTTCCTCACCGCCATAGTTCTTTTCATGTTCATGAGCGAGTGGCCCAAGGAAGGTGACAGGGGC AAGACGCCGTTCCAGAGGCTCTGGATGGCTTGGAGGCAGATACTGGGTGGATTACTCGTCTTCTTACTCTCCGGAATCCT TGGCTTCATCGTCATGAACACCAACCTCCTACCGACAACGAGCGCCTACACGAGGCTTACGCCCATGTTCATAGGCTTCT TTGGGATGTCCTGGGTGCTGCTGAACATACTCTCCAATCCACCCATGCTGGAACAGGTGCCGGACGATAGAATTGAGAGC AGTCCCTACAACATCGCTAAGGCCAGTTTTGGCGGTGCTCTTGGAGGAACAATAGCTGCCGTTTACCCGATAATCACTGG AGGTATGGGAGCGCTCATAGCGGGTCACATGACGAGCCAGCGCGGTGACGATGCCTTCATAATCAGTCAAGGAGTTAACA GGGTCATCTACTACGTCGGGGCCTTCACGCTGCTCTTCCTGCCCAACCTCAGGCTCACGAGGGGAGCGGCGGCATGGCTC GTTAGCTCGATATACACTCCGAAGAGCTACTCCGAATACTTGGCGGCCGTAGGCGTCATACTACTCAGCGCGGGAATAAG CTTCGTTTTCACCTACTACATCTCCAAGTTCCTTGCGAGGGGCTTCAACATCGTCCATATTAGGAAACTCTCTTACTTCG TAGCAATAACGCTGGTTATCATCTCATACGTCCTCACCGGACCGATGGGGATAGTGGTGCTTCTCGTCTCAACGGCAATA GGCATGATGGCGGCGGCCTTCAACACCAGAAGGAGTTACTGCCTCGGAGGCCTTATTCTTCCGGTGCTCATAAGTATGAC GGGACACACGGGCGAAGTTATGCACCTGCTTGGCCTGGGGTGA
Upstream 100 bases:
>100_bases CAGGTTGTCAGGATAGCAGGCTACGTTACCGAGTACAAGGGTACCATAGAGGTCGTCCCCTACATGAGTGACGCAATAAT CGTCGAGTGAGGTGATGACC
Downstream 100 bases:
>100_bases TGTAAAATGAGGGGCTTCACTCACTACATATCCGGTCTGGCGGCGGCGACCTTCTTCCCTGCTCTGGTCGCGGACTTGCG GATGGGCATCCTCATTCCAG
Product: membrane protein, conserved
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 440; Mature: 440
Protein sequence:
>440_residues MLPLSDILIWSLAGVLFGSLISWIPGFHIFNIMALLVAVFGVGELMPVQAFPFFAIGAIVAYAYVSAISSVYFSVADESA VFLLFPTQRYLLLGRGHEAVLLYLIGAVAGTLILVIGALFIFPKVLPPIYQATSPYITYFLTAIVLFMFMSEWPKEGDRG KTPFQRLWMAWRQILGGLLVFLLSGILGFIVMNTNLLPTTSAYTRLTPMFIGFFGMSWVLLNILSNPPMLEQVPDDRIES SPYNIAKASFGGALGGTIAAVYPIITGGMGALIAGHMTSQRGDDAFIISQGVNRVIYYVGAFTLLFLPNLRLTRGAAAWL VSSIYTPKSYSEYLAAVGVILLSAGISFVFTYYISKFLARGFNIVHIRKLSYFVAITLVIISYVLTGPMGIVVLLVSTAI GMMAAAFNTRRSYCLGGLILPVLISMTGHTGEVMHLLGLG
Sequences:
>Translated_440_residues MLPLSDILIWSLAGVLFGSLISWIPGFHIFNIMALLVAVFGVGELMPVQAFPFFAIGAIVAYAYVSAISSVYFSVADESA VFLLFPTQRYLLLGRGHEAVLLYLIGAVAGTLILVIGALFIFPKVLPPIYQATSPYITYFLTAIVLFMFMSEWPKEGDRG KTPFQRLWMAWRQILGGLLVFLLSGILGFIVMNTNLLPTTSAYTRLTPMFIGFFGMSWVLLNILSNPPMLEQVPDDRIES SPYNIAKASFGGALGGTIAAVYPIITGGMGALIAGHMTSQRGDDAFIISQGVNRVIYYVGAFTLLFLPNLRLTRGAAAWL VSSIYTPKSYSEYLAAVGVILLSAGISFVFTYYISKFLARGFNIVHIRKLSYFVAITLVIISYVLTGPMGIVVLLVSTAI GMMAAAFNTRRSYCLGGLILPVLISMTGHTGEVMHLLGLG >Mature_440_residues MLPLSDILIWSLAGVLFGSLISWIPGFHIFNIMALLVAVFGVGELMPVQAFPFFAIGAIVAYAYVSAISSVYFSVADESA VFLLFPTQRYLLLGRGHEAVLLYLIGAVAGTLILVIGALFIFPKVLPPIYQATSPYITYFLTAIVLFMFMSEWPKEGDRG KTPFQRLWMAWRQILGGLLVFLLSGILGFIVMNTNLLPTTSAYTRLTPMFIGFFGMSWVLLNILSNPPMLEQVPDDRIES SPYNIAKASFGGALGGTIAAVYPIITGGMGALIAGHMTSQRGDDAFIISQGVNRVIYYVGAFTLLFLPNLRLTRGAAAWL VSSIYTPKSYSEYLAAVGVILLSAGISFVFTYYISKFLARGFNIVHIRKLSYFVAITLVIISYVLTGPMGIVVLLVSTAI GMMAAAFNTRRSYCLGGLILPVLISMTGHTGEVMHLLGLG
Specific function: Unknown
COG id: COG1784
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002823 [H]
Pfam domain/function: PF01970 DUF112 [H]
EC number: NA
Molecular weight: Translated: 47825; Mature: 47825
Theoretical pI: Translated: 9.46; Mature: 9.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLPLSDILIWSLAGVLFGSLISWIPGFHIFNIMALLVAVFGVGELMPVQAFPFFAIGAIV CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH AYAYVSAISSVYFSVADESAVFLLFPTQRYLLLGRGHEAVLLYLIGAVAGTLILVIGALF HHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH IFPKVLPPIYQATSPYITYFLTAIVLFMFMSEWPKEGDRGKTPFQRLWMAWRQILGGLLV HHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH FLLSGILGFIVMNTNLLPTTSAYTRLTPMFIGFFGMSWVLLNILSNPPMLEQVPDDRIES HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCC SPYNIAKASFGGALGGTIAAVYPIITGGMGALIAGHMTSQRGDDAFIISQGVNRVIYYVG CCCCHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHH AFTLLFLPNLRLTRGAAAWLVSSIYTPKSYSEYLAAVGVILLSAGISFVFTYYISKFLAR HHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GFNIVHIRKLSYFVAITLVIISYVLTGPMGIVVLLVSTAIGMMAAAFNTRRSYCLGGLIL CCCEEEHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PVLISMTGHTGEVMHLLGLG HHHHHCCCCCHHHHHHHCCC >Mature Secondary Structure MLPLSDILIWSLAGVLFGSLISWIPGFHIFNIMALLVAVFGVGELMPVQAFPFFAIGAIV CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH AYAYVSAISSVYFSVADESAVFLLFPTQRYLLLGRGHEAVLLYLIGAVAGTLILVIGALF HHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH IFPKVLPPIYQATSPYITYFLTAIVLFMFMSEWPKEGDRGKTPFQRLWMAWRQILGGLLV HHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH FLLSGILGFIVMNTNLLPTTSAYTRLTPMFIGFFGMSWVLLNILSNPPMLEQVPDDRIES HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCC SPYNIAKASFGGALGGTIAAVYPIITGGMGALIAGHMTSQRGDDAFIISQGVNRVIYYVG CCCCHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHH AFTLLFLPNLRLTRGAAAWLVSSIYTPKSYSEYLAAVGVILLSAGISFVFTYYISKFLAR HHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GFNIVHIRKLSYFVAITLVIISYVLTGPMGIVVLLVSTAIGMMAAAFNTRRSYCLGGLIL CCCEEEHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PVLISMTGHTGEVMHLLGLG HHHHHCCCCCHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]