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The map label for this gene is tfe [H]

Identifier: 212224637

GI number: 212224637

Start: 1360637

End: 1361173

Strand: Reverse

Name: tfe [H]

Synonym: TON_1486

Alternate gene names: 212224637

Gene position: 1361173-1360637 (Counterclockwise)

Preceding gene: 212224638

Following gene: 212224636

Centisome position: 73.67

GC content: 51.58

Gene sequence:

>537_bases
GTGACAAGGAGAAAGAACAAGGAGCTCCTGGAACTCGCTATGGACCTGGGTGGAGAGGAAGCTGTTGAGGTAATTAAGGC
TCTCGAGAAGAAAAAGGAATCCACGGATGAGGAGCTCGCGGAAATGACTGGCATCCGGGTCAACACCGTCAGGAAAGTCC
TCTACATGCTCTACGACCAGGGTTTGGCAGAGTTCAAGCGCATAAGGGACAAAGAGACCGGCTGGTATTACTACTACTGG
CGTCTCGAAACCAAGAGACTTCCGGAGATAATCCGCTCCAAAAAGATGGCCGAGCTTAAGAGACTCAAGGAGATGCTCGA
GGAAGAGACAAGTGAGATCTACTACCACTGTGGCACTCCAGGCCATCCGAAGCTCACCTTCGATGAGGCCATGGAGTACG
AGTTCCAGTGTCCGATATGTGGTAATATGCTCATGCAGTACGATAATACCGTCGTCGTCGAGGAGCTCAAGAGGCGCATA
GAGGAGCTCGAGATCGAGCTCGGCCTTAGGAAGAAACCGAGGAAGTCGAAAAAGTAG

Upstream 100 bases:

>100_bases
TGACAAAAACCTATATATACTCCAGGCCATATAGTCTATTATTGGACAAACATTGGGGATTAAACTCAGGGTGGTCAAAT
ATTCTCTGGAGGTCGTTATT

Downstream 100 bases:

>100_bases
ATTTGAATGGTTTGGTTTGATGAACTTCGGGGATGGTGAGAATGCAGGAAGTAGTTATTCTGGAGAAGGTTTACGGGGAC
AGGAGCGGCTTTTTGAAGCT

Product: transcription initiation factor E subunit alpha

Products: NA

Alternate protein names: TFE; TFIIE subunit alpha homolog; Transcription initiation factor TFIIE [H]

Number of amino acids: Translated: 178; Mature: 177

Protein sequence:

>178_residues
MTRRKNKELLELAMDLGGEEAVEVIKALEKKKESTDEELAEMTGIRVNTVRKVLYMLYDQGLAEFKRIRDKETGWYYYYW
RLETKRLPEIIRSKKMAELKRLKEMLEEETSEIYYHCGTPGHPKLTFDEAMEYEFQCPICGNMLMQYDNTVVVEELKRRI
EELEIELGLRKKPRKSKK

Sequences:

>Translated_178_residues
MTRRKNKELLELAMDLGGEEAVEVIKALEKKKESTDEELAEMTGIRVNTVRKVLYMLYDQGLAEFKRIRDKETGWYYYYW
RLETKRLPEIIRSKKMAELKRLKEMLEEETSEIYYHCGTPGHPKLTFDEAMEYEFQCPICGNMLMQYDNTVVVEELKRRI
EELEIELGLRKKPRKSKK
>Mature_177_residues
TRRKNKELLELAMDLGGEEAVEVIKALEKKKESTDEELAEMTGIRVNTVRKVLYMLYDQGLAEFKRIRDKETGWYYYYWR
LETKRLPEIIRSKKMAELKRLKEMLEEETSEIYYHCGTPGHPKLTFDEAMEYEFQCPICGNMLMQYDNTVVVEELKRRIE
ELEIELGLRKKPRKSKK

Specific function: Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (tbp), and transcription factor B (tfb) and RNA po

COG id: COG1675

COG function: function code K; Transcription initiation factor IIE, alpha subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH TFE/IIEalpha-type domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016481
- InterPro:   IPR017919
- InterPro:   IPR002853
- InterPro:   IPR011991 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21313; Mature: 21182

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRRKNKELLELAMDLGGEEAVEVIKALEKKKESTDEELAEMTGIRVNTVRKVLYMLYDQ
CCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHH
GLAEFKRIRDKETGWYYYYWRLETKRLPEIIRSKKMAELKRLKEMLEEETSEIYYHCGTP
HHHHHHHHHCCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCC
GHPKLTFDEAMEYEFQCPICGNMLMQYDNTVVVEELKRRIEELEIELGLRKKPRKSKK
CCCCEEHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
TRRKNKELLELAMDLGGEEAVEVIKALEKKKESTDEELAEMTGIRVNTVRKVLYMLYDQ
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHH
GLAEFKRIRDKETGWYYYYWRLETKRLPEIIRSKKMAELKRLKEMLEEETSEIYYHCGTP
HHHHHHHHHCCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCC
GHPKLTFDEAMEYEFQCPICGNMLMQYDNTVVVEELKRRIEELEIELGLRKKPRKSKK
CCCCEEHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA