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The map label for this gene is ydcM [C]

Identifier: 212224393

GI number: 212224393

Start: 1133359

End: 1134669

Strand: Reverse

Name: ydcM [C]

Synonym: TON_1244

Alternate gene names: 212224393

Gene position: 1134669-1133359 (Counterclockwise)

Preceding gene: 212224394

Following gene: 212224392

Centisome position: 61.41

GC content: 44.55

Gene sequence:

>1311_bases
ATGAAGAGAACATTGACACTCAAACTCCAGCCCTCAAAAGAGCAAGAAAAGGCTCTCTTTCAGTTGGCTGACCTAAGTTC
CAGAGCATGGAATAGAGTAAACTACCTTAGACGGCAGGAATACTTCCAAGGAAAACCAATAGACTTTTTGAAAACTCAGA
AAATCGTTTACGAAGAGTTCAAGAAAGAAATCGGTTCTGCAACCGTCCAAACAATAGCGAGGAAAAACGCTGAAGCTTGG
CGGGGCTTCTTCTCCCTCCTCAGGAAGAAGAGGAACGGAGAACTCCCCACTTGGTTAAAACCAAAACCACCAAACTACCT
CAAAGAAAACGGGAAGAGAAAGCTCTTCATCGTTCTGAGAAACACTCAATACCGCATTGAAGGAAATAAGCTTATTTTAA
TGGGTCTCGGCAAATTCAAACGCCTCGAAATACAGTTTAAGGGGAGAATACACTTGAGGGGCAAGCAGGGAAGATTAGAA
ATCATCTATGATAATGCTAAGCAAAAATGGTATGCTCATGTCAGCTTCACCGTTGAGAAAAAGCTAATCAAAAACGAATG
GATCAGCGTTCCAAGAACACCAAAAGGAAGACTCACAGCAGGGATTGACTTAGGAGTGAACAACTTAATGGCCGTTTATG
TCGAGAACGGGGAAAGCTTCTTGGTGAATGGAAAACCACTAAAATCAATAGCCTTCTACTGGCAGAGGAGGATTGCGGAT
TATCAGTCGAAACTCAGCAAAAGCGGGGCTAAAAAGAGCAGGAAACTCAAAAGAATGCATGAAAAGGCCAAACTTCAGGC
GAAGCACTACATTAACACGGTGGTAAGACAAACAGTTAGGAGGCTTTACGATTTGGGTGTTTCTAAAATCGTCGTTGGTT
ACCCAAAGGGAATAGCAAGAAACTCTGAGAAGAGAAGGAAGCAAAATTTTCTCCTCTCTCACGTCTGGCGGTTTAATTAT
GTTATCAAACGTCTTAAGGAAGTTGCCGAAGAGTATGGTATCCTTGTTGAGGTCGTTGATGAGGCTTTCACTTCTAAAAC
CTGCCCCGTTTGCGGGAAGCCTCATAAAGGGGCGAGATTTGTTCGTGGTCTTTATTCGTGTCCCACAACGGGGCTTGTGT
TTAATGCCGACTTGGTTGGGGCATTTAATATTTTGAAGAAGGTAAAAACGATAACCCCGAGCCTTGAGGGTTTGAGAGCC
TTCCGGGTGAGGGGTAATGGGGGGAAGGCTCTCCCCGAGGGGTTGAAAACCCACTTTTTAGTGGGTTTGAATGAAGCCCC
CCAAACCTCCCTGTCACTGGCGAGGGGTTAA

Upstream 100 bases:

>100_bases
AACTCGTGGAAAAGAAATACGGGAAAATCAGGGGAGCTTTAGGCGTTGCAGTAACTGAAGCCATGAAACTCTGGATTAAA
AAAGTAGAAAGCGAGGAAAA

Downstream 100 bases:

>100_bases
TCCTCGCCCTTCAATGCAGGGAGGGAGGTCAGTCAATGGACAAGACTTATTAGCGGTGGGTGAAATTTTATCCCGGGTGG
TAGGGTGATTGAAGCCGAGA

Product: putative transposase

Products: NA

Alternate protein names: Neutral Protease; IS Element ISTsi3 OrfB Probably Transposase; Transposase ISC; Transposase Family; Transposase And Inactivated Derivatives; Transport-Associated OB Domain Protein; C-Terminal Of Inactivated Transposase; ISChy8 Transposase; IS Element ISDka2 OrfB; Transposase Family Protein; Transposase OrfB; Transposase IS; Transposase ORF_B; IS Element ISTsi2 OrfB Probably Transposase

Number of amino acids: Translated: 436; Mature: 436

Protein sequence:

>436_residues
MKRTLTLKLQPSKEQEKALFQLADLSSRAWNRVNYLRRQEYFQGKPIDFLKTQKIVYEEFKKEIGSATVQTIARKNAEAW
RGFFSLLRKKRNGELPTWLKPKPPNYLKENGKRKLFIVLRNTQYRIEGNKLILMGLGKFKRLEIQFKGRIHLRGKQGRLE
IIYDNAKQKWYAHVSFTVEKKLIKNEWISVPRTPKGRLTAGIDLGVNNLMAVYVENGESFLVNGKPLKSIAFYWQRRIAD
YQSKLSKSGAKKSRKLKRMHEKAKLQAKHYINTVVRQTVRRLYDLGVSKIVVGYPKGIARNSEKRRKQNFLLSHVWRFNY
VIKRLKEVAEEYGILVEVVDEAFTSKTCPVCGKPHKGARFVRGLYSCPTTGLVFNADLVGAFNILKKVKTITPSLEGLRA
FRVRGNGGKALPEGLKTHFLVGLNEAPQTSLSLARG

Sequences:

>Translated_436_residues
MKRTLTLKLQPSKEQEKALFQLADLSSRAWNRVNYLRRQEYFQGKPIDFLKTQKIVYEEFKKEIGSATVQTIARKNAEAW
RGFFSLLRKKRNGELPTWLKPKPPNYLKENGKRKLFIVLRNTQYRIEGNKLILMGLGKFKRLEIQFKGRIHLRGKQGRLE
IIYDNAKQKWYAHVSFTVEKKLIKNEWISVPRTPKGRLTAGIDLGVNNLMAVYVENGESFLVNGKPLKSIAFYWQRRIAD
YQSKLSKSGAKKSRKLKRMHEKAKLQAKHYINTVVRQTVRRLYDLGVSKIVVGYPKGIARNSEKRRKQNFLLSHVWRFNY
VIKRLKEVAEEYGILVEVVDEAFTSKTCPVCGKPHKGARFVRGLYSCPTTGLVFNADLVGAFNILKKVKTITPSLEGLRA
FRVRGNGGKALPEGLKTHFLVGLNEAPQTSLSLARG
>Mature_436_residues
MKRTLTLKLQPSKEQEKALFQLADLSSRAWNRVNYLRRQEYFQGKPIDFLKTQKIVYEEFKKEIGSATVQTIARKNAEAW
RGFFSLLRKKRNGELPTWLKPKPPNYLKENGKRKLFIVLRNTQYRIEGNKLILMGLGKFKRLEIQFKGRIHLRGKQGRLE
IIYDNAKQKWYAHVSFTVEKKLIKNEWISVPRTPKGRLTAGIDLGVNNLMAVYVENGESFLVNGKPLKSIAFYWQRRIAD
YQSKLSKSGAKKSRKLKRMHEKAKLQAKHYINTVVRQTVRRLYDLGVSKIVVGYPKGIARNSEKRRKQNFLLSHVWRFNY
VIKRLKEVAEEYGILVEVVDEAFTSKTCPVCGKPHKGARFVRGLYSCPTTGLVFNADLVGAFNILKKVKTITPSLEGLRA
FRVRGNGGKALPEGLKTHFLVGLNEAPQTSLSLARG

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50197; Mature: 50197

Theoretical pI: Translated: 11.09; Mature: 11.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRTLTLKLQPSKEQEKALFQLADLSSRAWNRVNYLRRQEYFQGKPIDFLKTQKIVYEEF
CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
KKEIGSATVQTIARKNAEAWRGFFSLLRKKRNGELPTWLKPKPPNYLKENGKRKLFIVLR
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCEEEEEEEE
NTQYRIEGNKLILMGLGKFKRLEIQFKGRIHLRGKQGRLEIIYDNAKQKWYAHVSFTVEK
CCEEEEECCEEEEEECCCCEEEEEEEECEEEEECCCCCEEEEEECCCCEEEEEEEEEHHH
KLIKNEWISVPRTPKGRLTAGIDLGVNNLMAVYVENGESFLVNGKPLKSIAFYWQRRIAD
HHHHHHCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCEEEECCCCHHHHHHHHHHHHHH
YQSKLSKSGAKKSRKLKRMHEKAKLQAKHYINTVVRQTVRRLYDLGVSKIVVGYPKGIAR
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEECCCCCCC
NSEKRRKQNFLLSHVWRFNYVIKRLKEVAEEYGILVEVVDEAFTSKTCPVCGKPHKGARF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCHHH
VRGLYSCPTTGLVFNADLVGAFNILKKVKTITPSLEGLRAFRVRGNGGKALPEGLKTHFL
HHHHHCCCCCCEEEECHHHHHHHHHHHHHHHCCCHHCCEEEEEECCCCCCCHHCCCEEEE
VGLNEAPQTSLSLARG
EECCCCCCCCHHCCCC
>Mature Secondary Structure
MKRTLTLKLQPSKEQEKALFQLADLSSRAWNRVNYLRRQEYFQGKPIDFLKTQKIVYEEF
CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
KKEIGSATVQTIARKNAEAWRGFFSLLRKKRNGELPTWLKPKPPNYLKENGKRKLFIVLR
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCEEEEEEEE
NTQYRIEGNKLILMGLGKFKRLEIQFKGRIHLRGKQGRLEIIYDNAKQKWYAHVSFTVEK
CCEEEEECCEEEEEECCCCEEEEEEEECEEEEECCCCCEEEEEECCCCEEEEEEEEEHHH
KLIKNEWISVPRTPKGRLTAGIDLGVNNLMAVYVENGESFLVNGKPLKSIAFYWQRRIAD
HHHHHHCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCEEEECCCCHHHHHHHHHHHHHH
YQSKLSKSGAKKSRKLKRMHEKAKLQAKHYINTVVRQTVRRLYDLGVSKIVVGYPKGIAR
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEECCCCCCC
NSEKRRKQNFLLSHVWRFNYVIKRLKEVAEEYGILVEVVDEAFTSKTCPVCGKPHKGARF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCHHH
VRGLYSCPTTGLVFNADLVGAFNILKKVKTITPSLEGLRAFRVRGNGGKALPEGLKTHFL
HHHHHCCCCCCEEEECHHHHHHHHHHHHHHHCCCHHCCEEEEEECCCCCCCHHCCCEEEE
VGLNEAPQTSLSLARG
EECCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA