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The map label for this gene is rpl39e [H]

Identifier: 212224258

GI number: 212224258

Start: 1025446

End: 1025601

Strand: Reverse

Name: rpl39e [H]

Synonym: TON_1109

Alternate gene names: 212224258

Gene position: 1025601-1025446 (Counterclockwise)

Preceding gene: 212224259

Following gene: 212224257

Centisome position: 55.51

GC content: 52.56

Gene sequence:

>156_bases
ATGGCGAGAAACAAGCCGCTTGCAAAGAAGCTCAGACTTGCCAAGGCTGCGAAGCAGAACAGGCGTGTTCCGGTCTGGGT
CATCGTTAAGACCAACAGGAAGGTCATGACACACCCGAAGAGAAGGATGTGGAGAAGGACCAAGCTTAAGGAGTGA

Upstream 100 bases:

>100_bases
CATCCTTCCCTTTAGAAAACCTTAAAACCCCACGAAAAAGCTTAAAAAAGGATAGGTCAAGCAACGTTAGACATCACGAT
AACCTCGGGAGGGATTGTGA

Downstream 100 bases:

>100_bases
GGTGATATAGATGCCGATTAAGCCGGGAGACGAGGTTATATTCACCGTTCCGATTAGGAAGGTTAAGAAGAGGGTTCCAC
GCTGGAAGAGAGCCCCTAGA

Product: 50S ribosomal protein L39e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 51; Mature: 50

Protein sequence:

>51_residues
MARNKPLAKKLRLAKAAKQNRRVPVWVIVKTNRKVMTHPKRRMWRRTKLKE

Sequences:

>Translated_51_residues
MARNKPLAKKLRLAKAAKQNRRVPVWVIVKTNRKVMTHPKRRMWRRTKLKE
>Mature_50_residues
ARNKPLAKKLRLAKAAKQNRRVPVWVIVKTNRKVMTHPKRRMWRRTKLKE

Specific function: Unknown

COG id: COG2167

COG function: function code J; Ribosomal protein L39E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L39e family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000077
- InterPro:   IPR020083 [H]

Pfam domain/function: PF00832 Ribosomal_L39 [H]

EC number: NA

Molecular weight: Translated: 6220; Mature: 6089

Theoretical pI: Translated: 13.06; Mature: 13.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARNKPLAKKLRLAKAAKQNRRVPVWVIVKTNRKVMTHPKRRMWRRTKLKE
CCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure 
ARNKPLAKKLRLAKAAKQNRRVPVWVIVKTNRKVMTHPKRRMWRRTKLKE
CCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA