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The map label for this gene is yvrC [H]

Identifier: 212223694

GI number: 212223694

Start: 500315

End: 502189

Strand: Reverse

Name: yvrC [H]

Synonym: TON_0546

Alternate gene names: 212223694

Gene position: 502189-500315 (Counterclockwise)

Preceding gene: 212223695

Following gene: 212223693

Centisome position: 27.18

GC content: 53.17

Gene sequence:

>1875_bases
ATGAAAAAGACTGCCGTCTTGCTCATGTTCCTAATGCTCGGGGCAGTCATAGCGGCCGGCTGTATAAGCTCAAACGGGTC
AACCACCACTCCGACCGTGCCGAGTACCACCTCAAGCGAAACGTCAAGCCCGAGCCCTAGCCCAACGACCACTTCGGGCT
CGAGCCCGAGTGAAACGACCACGACTGCAACAGAGAAGCCCTACTATCCAATTACTATAACTGACTTTGCAGACAGAGAA
GTAACAATCGAGAAGGAGCCAATGAAAGTCGTTACCCTCGCGCCCAGCATAACAGAAGACCTCTACTATCTCGGTCTCTT
CGACAGGGTAGTCGGCGTTACAGACTACGATGACTTCCCGCCGGAGGTTGCGAACGTAACCAGGATCGGCGGCTACGGTC
AGTACGCGAACCTCGAAATCATAGCTTCACTCAAGCCGGATCTCATCCTCGTAGACAGCTTCTCGATGCCAATCCTGAGC
GACCTCGAAAAGATAGCCCCAGTTGTTGTCGTTGATCCCCACAGTCTGGATGACATACCGAAGGCTCTTGAACTCCTTGG
GAAGGTATTTAATAAAGAAGATGTCGCCGCTTCCGCAATGGCAGAATTCCAGGCAGGGATAGACGCCATCAGCTCGGCGG
TTAAGGATGAACCCAAGCTTAAGATCTTCTACGTTGTTTGGAACAACCCGCTTATGACTGCCGGCGGCGGCACTTTCATC
AGCGACATCATGAACCTTGCAGGGGGAGAAAATATCTTCGCAGACGCTGAAGGCTGGCCGACCGTCAGCATCGAGCAGGT
CATCGAGAGGGACCCTGACGTGATAATACTTACCCCCCACTGCGGCATGACTGTCCAGGATGTCTACAAGGGCGAGCTTG
CCAACACGAAGGCAGCCAAGGAAGGAAAGGTCTTCGTGATCGAGAACGAGAACGACCTTATTCACCCGAGCCCAAGGGTT
GTTAGGGGCCTGGAAACCCTCGCTAAGCTCCTTCACCCGAAAGCATTCGAGACGGCATACCCACTTACAGTTACGGACTT
TGCCGGCAGGCAGGTTACTATCGAGAGCGAGCCGATGAGAATAGTCTCCCTTGCACCGAGCATTACAGAAAGCCTATTCT
ACATCGGAGCAGGTGATAAGGTGGTTGGAGTTACAGACTACGATGATTTCCCACCAGTCGTCAGGAACATCACAAGTGTA
GGTGGCTATGGCCAGTACGCAAACCTTGAGATTATAGCATCCCTCAACCCAGACCTCATCCTCGTAGACAGCTTCTCGAT
GCCAATCCTGAGCGACCTCGAAAAGATAGCCCCCGTCGTCATAGTGGATCCAAAGAACATCAGCGACATCTACATAGAGA
TAGAGATGCTTGGAGAGATAACCAACCGTGAGGAAGGGGCGAGGGCGGTAGTTGCCGACATGAAGGCGAAGGTGAGCTAT
ATCACCTCAATGGTCAACGGGCAGGAGAAACCTAAGGTGCTCTTCATAACCTGGTGGAACCCGCTCTATGTTCCGGGCAG
TGGCACCTTCCAGGACGACCTCATAAAACTCGCCGGTGGAGAGAACATCTTCTCTGACATGAGCGGTTGGGCCCAGGTCA
GCCTTGAGCAGGTGCTCGAGAGAAACCCGGAGATAATAATTCTTTCAGCCCATGCAGGTATAACTGCCGAGGATCTGTGC
AACACCGAGCTTGCCAACACTGACGCAGTGAAGAACGGTAGGGTCTACACAATCAGCGACGACAATCTCGTCTCAAGACC
TGGTCCAAGAATAGTCTACGGCCTCGAGGAGATAGCCGAGTTCCTGCACCCGGAGCTCTTCAACTATCAGCCACAGCCAC
TCGTTTGCAATGCAGCCTCTTCAGCCTCCGGTTGA

Upstream 100 bases:

>100_bases
TTCCTTTTCTTTTTAGATCTTTCACAGATGGCCAAAATATCCAACAAACTTATATACCTCTAGCCCAACCACTAATGGAC
AAATAATCCAGGTGATGGCA

Downstream 100 bases:

>100_bases
TCTCCTTTTTATTTATTCTAGTAAAGGTTAAAAGTCCACCCACCCATTCCCCCCGGGTGGGAACATGGAGAGGAAAACGT
TCTACAGGCTTCTGCTCGTC

Product: putative vitamin B12 transport protein precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 624; Mature: 624

Protein sequence:

>624_residues
MKKTAVLLMFLMLGAVIAAGCISSNGSTTTPTVPSTTSSETSSPSPSPTTTSGSSPSETTTTATEKPYYPITITDFADRE
VTIEKEPMKVVTLAPSITEDLYYLGLFDRVVGVTDYDDFPPEVANVTRIGGYGQYANLEIIASLKPDLILVDSFSMPILS
DLEKIAPVVVVDPHSLDDIPKALELLGKVFNKEDVAASAMAEFQAGIDAISSAVKDEPKLKIFYVVWNNPLMTAGGGTFI
SDIMNLAGGENIFADAEGWPTVSIEQVIERDPDVIILTPHCGMTVQDVYKGELANTKAAKEGKVFVIENENDLIHPSPRV
VRGLETLAKLLHPKAFETAYPLTVTDFAGRQVTIESEPMRIVSLAPSITESLFYIGAGDKVVGVTDYDDFPPVVRNITSV
GGYGQYANLEIIASLNPDLILVDSFSMPILSDLEKIAPVVIVDPKNISDIYIEIEMLGEITNREEGARAVVADMKAKVSY
ITSMVNGQEKPKVLFITWWNPLYVPGSGTFQDDLIKLAGGENIFSDMSGWAQVSLEQVLERNPEIIILSAHAGITAEDLC
NTELANTDAVKNGRVYTISDDNLVSRPGPRIVYGLEEIAEFLHPELFNYQPQPLVCNAASSASG

Sequences:

>Translated_624_residues
MKKTAVLLMFLMLGAVIAAGCISSNGSTTTPTVPSTTSSETSSPSPSPTTTSGSSPSETTTTATEKPYYPITITDFADRE
VTIEKEPMKVVTLAPSITEDLYYLGLFDRVVGVTDYDDFPPEVANVTRIGGYGQYANLEIIASLKPDLILVDSFSMPILS
DLEKIAPVVVVDPHSLDDIPKALELLGKVFNKEDVAASAMAEFQAGIDAISSAVKDEPKLKIFYVVWNNPLMTAGGGTFI
SDIMNLAGGENIFADAEGWPTVSIEQVIERDPDVIILTPHCGMTVQDVYKGELANTKAAKEGKVFVIENENDLIHPSPRV
VRGLETLAKLLHPKAFETAYPLTVTDFAGRQVTIESEPMRIVSLAPSITESLFYIGAGDKVVGVTDYDDFPPVVRNITSV
GGYGQYANLEIIASLNPDLILVDSFSMPILSDLEKIAPVVIVDPKNISDIYIEIEMLGEITNREEGARAVVADMKAKVSY
ITSMVNGQEKPKVLFITWWNPLYVPGSGTFQDDLIKLAGGENIFSDMSGWAQVSLEQVLERNPEIIILSAHAGITAEDLC
NTELANTDAVKNGRVYTISDDNLVSRPGPRIVYGLEEIAEFLHPELFNYQPQPLVCNAASSASG
>Mature_624_residues
MKKTAVLLMFLMLGAVIAAGCISSNGSTTTPTVPSTTSSETSSPSPSPTTTSGSSPSETTTTATEKPYYPITITDFADRE
VTIEKEPMKVVTLAPSITEDLYYLGLFDRVVGVTDYDDFPPEVANVTRIGGYGQYANLEIIASLKPDLILVDSFSMPILS
DLEKIAPVVVVDPHSLDDIPKALELLGKVFNKEDVAASAMAEFQAGIDAISSAVKDEPKLKIFYVVWNNPLMTAGGGTFI
SDIMNLAGGENIFADAEGWPTVSIEQVIERDPDVIILTPHCGMTVQDVYKGELANTKAAKEGKVFVIENENDLIHPSPRV
VRGLETLAKLLHPKAFETAYPLTVTDFAGRQVTIESEPMRIVSLAPSITESLFYIGAGDKVVGVTDYDDFPPVVRNITSV
GGYGQYANLEIIASLNPDLILVDSFSMPILSDLEKIAPVVIVDPKNISDIYIEIEMLGEITNREEGARAVVADMKAKVSY
ITSMVNGQEKPKVLFITWWNPLYVPGSGTFQDDLIKLAGGENIFSDMSGWAQVSLEQVLERNPEIIILSAHAGITAEDLC
NTELANTDAVKNGRVYTISDDNLVSRPGPRIVYGLEEIAEFLHPELFNYQPQPLVCNAASSASG

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786353, Length=251, Percent_Identity=29.0836653386454, Blast_Score=95, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 67475; Mature: 67475

Theoretical pI: Translated: 4.15; Mature: 4.15

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTAVLLMFLMLGAVIAAGCISSNGSTTTPTVPSTTSSETSSPSPSPTTTSGSSPSETT
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TTATEKPYYPITITDFADREVTIEKEPMKVVTLAPSITEDLYYLGLFDRVVGVTDYDDFP
CCCCCCCEEEEEEECCCCCEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCC
PEVANVTRIGGYGQYANLEIIASLKPDLILVDSFSMPILSDLEKIAPVVVVDPHSLDDIP
CHHHCEEEECCCCCCCCEEEEEECCCCEEEEECCCCHHHHHHHHHCCEEEECCCCCCHHH
KALELLGKVFNKEDVAASAMAEFQAGIDAISSAVKDEPKLKIFYVVWNNPLMTAGGGTFI
HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEECCCCHHH
SDIMNLAGGENIFADAEGWPTVSIEQVIERDPDVIILTPHCGMTVQDVYKGELANTKAAK
HHHHHHCCCCCEEECCCCCCCEEHHHHHHCCCCEEEECCCCCCCHHHHHCCCCCCCCCCC
EGKVFVIENENDLIHPSPRVVRGLETLAKLLHPKAFETAYPLTVTDFAGRQVTIESEPMR
CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCHHCCCCCEEEECCCCCEEEECCCCEE
IVSLAPSITESLFYIGAGDKVVGVTDYDDFPPVVRNITSVGGYGQYANLEIIASLNPDLI
EEEECCHHHHCEEEEECCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCEE
LVDSFSMPILSDLEKIAPVVIVDPKNISDIYIEIEMLGEITNREEGARAVVADMKAKVSY
EEECCCCHHHHHHHHHCCEEEECCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHH
ITSMVNGQEKPKVLFITWWNPLYVPGSGTFQDDLIKLAGGENIFSDMSGWAQVSLEQVLE
HHHHHCCCCCCEEEEEEECCEEEECCCCCCHHHHEEECCCCHHHHHHCHHHHHHHHHHHH
RNPEIIILSAHAGITAEDLCNTELANTDAVKNGRVYTISDDNLVSRPGPRIVYGLEEIAE
CCCCEEEEECCCCCCHHHHCCCCCCCCCCCCCCEEEEECCCCEECCCCCEEEECHHHHHH
FLHPELFNYQPQPLVCNAASSASG
HHCHHHHCCCCCCEEEECCCCCCC
>Mature Secondary Structure
MKKTAVLLMFLMLGAVIAAGCISSNGSTTTPTVPSTTSSETSSPSPSPTTTSGSSPSETT
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TTATEKPYYPITITDFADREVTIEKEPMKVVTLAPSITEDLYYLGLFDRVVGVTDYDDFP
CCCCCCCEEEEEEECCCCCEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCC
PEVANVTRIGGYGQYANLEIIASLKPDLILVDSFSMPILSDLEKIAPVVVVDPHSLDDIP
CHHHCEEEECCCCCCCCEEEEEECCCCEEEEECCCCHHHHHHHHHCCEEEECCCCCCHHH
KALELLGKVFNKEDVAASAMAEFQAGIDAISSAVKDEPKLKIFYVVWNNPLMTAGGGTFI
HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEECCCCHHH
SDIMNLAGGENIFADAEGWPTVSIEQVIERDPDVIILTPHCGMTVQDVYKGELANTKAAK
HHHHHHCCCCCEEECCCCCCCEEHHHHHHCCCCEEEECCCCCCCHHHHHCCCCCCCCCCC
EGKVFVIENENDLIHPSPRVVRGLETLAKLLHPKAFETAYPLTVTDFAGRQVTIESEPMR
CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCHHCCCCCEEEECCCCCEEEECCCCEE
IVSLAPSITESLFYIGAGDKVVGVTDYDDFPPVVRNITSVGGYGQYANLEIIASLNPDLI
EEEECCHHHHCEEEEECCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCEE
LVDSFSMPILSDLEKIAPVVIVDPKNISDIYIEIEMLGEITNREEGARAVVADMKAKVSY
EEECCCCHHHHHHHHHCCEEEECCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHH
ITSMVNGQEKPKVLFITWWNPLYVPGSGTFQDDLIKLAGGENIFSDMSGWAQVSLEQVLE
HHHHHCCCCCCEEEEEEECCEEEECCCCCCHHHHEEECCCCHHHHHHCHHHHHHHHHHHH
RNPEIIILSAHAGITAEDLCNTELANTDAVKNGRVYTISDDNLVSRPGPRIVYGLEEIAE
CCCCEEEEECCCCCCHHHHCCCCCCCCCCCCCCEEEEECCCCEECCCCCEEEECHHHHHH
FLHPELFNYQPQPLVCNAASSASG
HHCHHHHCCCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]