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The map label for this gene is tdcF [C]

Identifier: 212223675

GI number: 212223675

Start: 481929

End: 482312

Strand: Reverse

Name: tdcF [C]

Synonym: TON_0527

Alternate gene names: 212223675

Gene position: 482312-481929 (Counterclockwise)

Preceding gene: 212223676

Following gene: 212223674

Centisome position: 26.1

GC content: 51.3

Gene sequence:

>384_bases
ATGAAAAAGGTTGTTTTCACAGAAAACGCCCCAAAACCGATAGGGCCCTACAGCCAGGGGATCGTCGCTGAGGCAGGCAG
GCTACTCTTTGTCTCCGGCCAGATACCAATAAATCCGGAGACAGGAGAGCTCGTGGAGGGCTCAATAGAGAAACAGGCAA
AGCGGGCAATTGAGAACCTGCTAGCAGTAGTGAAAGCCGCCGGCGGAAGCGCTGAGAACGTCGTTAAAGTTACAGTATAT
CTGAGAGACATAAACGACTACGCCAAGTTCAACGAGGTTTACGAGAAATATTTCTCAGAGTCCAAGCCGGCCAGGGCGGT
AGTCGAAGTCTCCAATCTGCCGAAGGGCGTTAAGGTTGAGATAGAGGCAATTGCCGCTCTTTGA

Upstream 100 bases:

>100_bases
GAGAAATACCTGGAGAAGAAATGATGAGGCCGAGGACACCCGAGCGGAGGCGATGAGGAATCTTCGCTTCGCTGATTTCT
TAATTTTCGGAGGTGGGAAA

Downstream 100 bases:

>100_bases
TATCCCCTTTTGATTATTTTCGGTGAGCAAGATGGAAACCGTCAAAATTAGAAGGGAGCTCTTGGGATACCTCCTTGAAT
TAGCCCGCGAATTCTATCCC

Product: protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MKKVVFTENAPKPIGPYSQGIVAEAGRLLFVSGQIPINPETGELVEGSIEKQAKRAIENLLAVVKAAGGSAENVVKVTVY
LRDINDYAKFNEVYEKYFSESKPARAVVEVSNLPKGVKVEIEAIAAL

Sequences:

>Translated_127_residues
MKKVVFTENAPKPIGPYSQGIVAEAGRLLFVSGQIPINPETGELVEGSIEKQAKRAIENLLAVVKAAGGSAENVVKVTVY
LRDINDYAKFNEVYEKYFSESKPARAVVEVSNLPKGVKVEIEAIAAL
>Mature_127_residues
MKKVVFTENAPKPIGPYSQGIVAEAGRLLFVSGQIPINPETGELVEGSIEKQAKRAIENLLAVVKAAGGSAENVVKVTVY
LRDINDYAKFNEVYEKYFSESKPARAVVEVSNLPKGVKVEIEAIAAL

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=125, Percent_Identity=46.4, Blast_Score=126, Evalue=5e-30,
Organism=Escherichia coli, GI87082213, Length=128, Percent_Identity=47.65625, Blast_Score=128, Evalue=1e-31,
Organism=Escherichia coli, GI87082396, Length=128, Percent_Identity=49.21875, Blast_Score=128, Evalue=1e-31,
Organism=Escherichia coli, GI1787245, Length=126, Percent_Identity=26.1904761904762, Blast_Score=66, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI25148896, Length=124, Percent_Identity=47.5806451612903, Blast_Score=113, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI71982075, Length=124, Percent_Identity=47.5806451612903, Blast_Score=113, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI71982068, Length=124, Percent_Identity=47.5806451612903, Blast_Score=113, Evalue=3e-26,
Organism=Saccharomyces cerevisiae, GI6320899, Length=101, Percent_Identity=51.4851485148515, Blast_Score=107, Evalue=4e-25,
Organism=Saccharomyces cerevisiae, GI6322138, Length=121, Percent_Identity=40.495867768595, Blast_Score=94, Evalue=4e-21,
Organism=Drosophila melanogaster, GI19921376, Length=125, Percent_Identity=44, Blast_Score=113, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13719; Mature: 13719

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVVFTENAPKPIGPYSQGIVAEAGRLLFVSGQIPINPETGELVEGSIEKQAKRAIENL
CCCEEECCCCCCCCCCCCCCHHHCCCCEEEEECCCCCCCCCCCHHCCHHHHHHHHHHHHH
LAVVKAAGGSAENVVKVTVYLRDINDYAKFNEVYEKYFSESKPARAVVEVSNLPKGVKVE
HHHHHHCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCEEE
IEAIAAL
EEEEECC
>Mature Secondary Structure
MKKVVFTENAPKPIGPYSQGIVAEAGRLLFVSGQIPINPETGELVEGSIEKQAKRAIENL
CCCEEECCCCCCCCCCCCCCHHHCCCCEEEEECCCCCCCCCCCHHCCHHHHHHHHHHHHH
LAVVKAAGGSAENVVKVTVYLRDINDYAKFNEVYEKYFSESKPARAVVEVSNLPKGVKVE
HHHHHHCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCEEE
IEAIAAL
EEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]