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The map label for this gene is atpH

Identifier: 209696446

GI number: 209696446

Start: 3318053

End: 3318586

Strand: Reverse

Name: atpH

Synonym: VSAL_I3062

Alternate gene names: 209696446

Gene position: 3318586-3318053 (Counterclockwise)

Preceding gene: 209696447

Following gene: 209696445

Centisome position: 99.8

GC content: 41.2

Gene sequence:

>534_bases
ATGTCGACAATGACAACCATCGCACGCCCCTACGCGAAAGCAGCTTTTGACTTTGCGGTCGAAAAGAACGAATTGAACCA
ATGGGTTCAAATGTTAACTTTTTGTTCAGAAGTTACAAAAAATAAAGACATGGCTCAATTGCTAGATGGTGCAGTCGCAC
CAGAAAAATTAGCGGAAATCTTTATTTCTATTTGTGGCGAACAACTGAACGAGTTTGGACAGAATCTGATTCACATAATG
GCTGAAAACGGTCGTTTAAAGGTTCTACCTGATGTGTTAGATCAATATATCCTTTTACAACATGAGTTTGAAAAAGTGAT
TGATGCTGAAATTATTTCGGCAATTGAACTAACTGAACAGCAAAAAGCTGACATTGGCGCCAAACTTGAAGCTCGTTTAG
AGCGCAAAGTGAAGCTGAATTGTAGCGTAGATGAGGCCCTGTTAGCTGGGGTCATAATTCGAGCCGGAGACCTAGTCATT
GATAACTCAGTTAGAGGCCGTTTGAGCCGACTGAGTGAAACATTGCAGTCTTGA

Upstream 100 bases:

>100_bases
TTGGTGCTGAGAAAATCTTGGAGCGTTCTATTAATTTAGAAGCGCAGAAAGATATTCTTGATAACATCACTGCGAAATTG
TAAGTAAAAGGGGCTAAGAT

Downstream 100 bases:

>100_bases
TGGGGAATGGTGCATGCAACTTAATTCCACGGAAATTAGCGATCTGATCAAACAACGTATTGAAAAATTCAACGTTGCAA
GTGAAGCTCGTAATGAAGGT

Product: F0F1 ATP synthase subunit delta

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F(1) sector subunit delta; F-type ATPase subunit delta; F-ATPase subunit delta

Number of amino acids: Translated: 177; Mature: 176

Protein sequence:

>177_residues
MSTMTTIARPYAKAAFDFAVEKNELNQWVQMLTFCSEVTKNKDMAQLLDGAVAPEKLAEIFISICGEQLNEFGQNLIHIM
AENGRLKVLPDVLDQYILLQHEFEKVIDAEIISAIELTEQQKADIGAKLEARLERKVKLNCSVDEALLAGVIIRAGDLVI
DNSVRGRLSRLSETLQS

Sequences:

>Translated_177_residues
MSTMTTIARPYAKAAFDFAVEKNELNQWVQMLTFCSEVTKNKDMAQLLDGAVAPEKLAEIFISICGEQLNEFGQNLIHIM
AENGRLKVLPDVLDQYILLQHEFEKVIDAEIISAIELTEQQKADIGAKLEARLERKVKLNCSVDEALLAGVIIRAGDLVI
DNSVRGRLSRLSETLQS
>Mature_176_residues
STMTTIARPYAKAAFDFAVEKNELNQWVQMLTFCSEVTKNKDMAQLLDGAVAPEKLAEIFISICGEQLNEFGQNLIHIMA
ENGRLKVLPDVLDQYILLQHEFEKVIDAEIISAIELTEQQKADIGAKLEARLERKVKLNCSVDEALLAGVIIRAGDLVID
NSVRGRLSRLSETLQS

Specific function: This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction

COG id: COG0712

COG function: function code C; F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein)

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase delta chain family

Homologues:

Organism=Escherichia coli, GI1790173, Length=177, Percent_Identity=62.7118644067797, Blast_Score=232, Evalue=8e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPD_ALISL (B6EHU0)

Other databases:

- EMBL:   FM178379
- RefSeq:   YP_002264377.1
- GeneID:   6988277
- GenomeReviews:   FM178379_GR
- KEGG:   vsa:VSAL_I3062
- HOGENOM:   HBG668108
- OMA:   ASLERKF
- ProtClustDB:   PRK05758
- HAMAP:   MF_01416
- InterPro:   IPR000711
- InterPro:   IPR020781
- Gene3D:   G3DSA:1.10.520.20
- PANTHER:   PTHR11910
- PRINTS:   PR00125
- TIGRFAMs:   TIGR01145

Pfam domain/function: PF00213 OSCP; SSF47928 ATPsynt_OSCP

EC number: 3.6.3.14

Molecular weight: Translated: 19748; Mature: 19617

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: PS00389 ATPASE_DELTA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTMTTIARPYAKAAFDFAVEKNELNQWVQMLTFCSEVTKNKDMAQLLDGAVAPEKLAEI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHH
FISICGEQLNEFGQNLIHIMAENGRLKVLPDVLDQYILLQHEFEKVIDAEIISAIELTEQ
HHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QKADIGAKLEARLERKVKLNCSVDEALLAGVIIRAGDLVIDNSVRGRLSRLSETLQS
HHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
STMTTIARPYAKAAFDFAVEKNELNQWVQMLTFCSEVTKNKDMAQLLDGAVAPEKLAEI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHH
FISICGEQLNEFGQNLIHIMAENGRLKVLPDVLDQYILLQHEFEKVIDAEIISAIELTEQ
HHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QKADIGAKLEARLERKVKLNCSVDEALLAGVIIRAGDLVIDNSVRGRLSRLSETLQS
HHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: Borate; diphosphate; HCO3- [C]

Metal ions: Co2+; Fe2+; Mn2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: Phosphorous acid anhydride hydrolysis [C]

Inhibitor: Ca2+; CN-; Efrapeptin; Ethidiumbromide; Guanidines analogs; Oligomycin; Quercetin; Trialkyl tin derivatives; Venturicidin [C]

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA