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The map label for this gene is atpD [H]

Identifier: 209696443

GI number: 209696443

Start: 3314149

End: 3315552

Strand: Reverse

Name: atpD [H]

Synonym: VSAL_I3059

Alternate gene names: 209696443

Gene position: 3315552-3314149 (Counterclockwise)

Preceding gene: 209696444

Following gene: 209696442

Centisome position: 99.71

GC content: 44.44

Gene sequence:

>1404_bases
ATGACTACAGGTAAGATCGTACAGATCATCGGTGCGGTAGTCGATGTAGAGTTCCCACAAGGCAGTGTACCTCGTGTATA
CGATGCTCTGAATGTTGTTGATGCAAAAGAACGTCTTGTTCTTGAAGTTCAACAGCAGATTGGCGGTGGCGTTGTTCGCG
CAATCGTAATGGGTAGCTCAGATGGTTTACGTCGTGGCTTAACAGTAGAAAATACTGGCGCGCCAATTACTGTTCCAGTG
GGTACTAAAACGTTAGGCCGTATCATGAACGTTCTTGGGGACGCGATTGATGAGTGTGGTGAAATTGGTGCTGAAGAGCA
TTATTCCATTCACCGTGCAGCGCCTAGCTATGAAGAGCAGGCAAACTCGACTGAACTTCTAGAGACGGGTGTTAAAGTAA
TCGATTTGATTTGTCCATTCGCTAAGGGTGGTAAAATCGGTCTATTCGGTGGTGCTGGTGTAGGTAAGACCGTCAACATG
ATGGAACTTATCAATAACATCGCACTACAGCACTCTGGCCTATCTGTGTTTGCAGGTGTAGGTGAGCGTACTCGTGAAGG
TAATGATTTCTACTTTGAAATGCAGGAAGCAGGTGTTGTAAACATCGAACATCCTGAAGAATCAAAAGTAGCGATGGTTT
ACGGTCAAATGAATGAGCCACCGGGTAACCGTTTACGTGTTGCTTTGACTGGTCTAACAATGGCTGAGCGTTTCCGTGAC
GAAGGTCGTGACGTTTTACTATTCATTGATAACATCTATCGTTATACGCTTGCCGGAACTGAAGTATCAGCTCTGCTAGG
TCGTATGCCATCAGCGGTAGGTTACCAACCTACACTAGCTGAAGAGATGGGTGTTCTTCAGGAACGTATCACTTCAACTC
GTAGTGGTTCTATCACTTCAGTTCAAGCGGTATATGTACCTGCGGATGACTTAACGGATCCATCTCCAGCAACAACGTTT
GCTCACTTAGATGCGACAGTTGTACTTAACCGTAATATCGCATCTATGGGTTTATACCCAGCGATTGACCCGTTAGATTC
TACATCTCGTCAACTTGATCCACTTGTTGTTGGTCAAGAGCACTATGATATCGCCCGTAATGTACAATCTACATTACAGC
GTTATAAAGAGCTAAAAGACATTATTGCTATCCTAGGTATGGACGAGCTATCTGAAGAAGATAAGCAAGTTGTATCTCGT
GCCCGTAAGATTGAGAAGTTCTTAACTCAACCTTACCATGTAGCAGAAGTATTCACAGGCGACCCTGGTATTTACGTATC
ACTTAAAGACACATTAGCTGGCTTTAAGGGTTTATTAGCTGGTGATTACGATGACGTTCCTGAGCAAGCCTTCATGTACT
GCGGTAGAATTGAAGATGCGCTTGAGAATGCGAAGAAGCTATAA

Upstream 100 bases:

>100_bases
CAAAGCCCGTCAATCGGCGATTACACAAGAGCTTTCTGAAATTGTTTCAGGCGCATCAGCGGTTTAAGCATAGGTATTTA
AACAGTTTAGAGGATTAACG

Downstream 100 bases:

>100_bases
GGCTGATTAGGAGGCGATATGGCAGCAATGACCTTTCATCTGGACGTTGTAAGTGCTGAGAAAAGTTTATTCTCAGGGCT
TGTTGAAACGATTCAGGTGA

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta 1; F-ATPase subunit beta 1 [H]

Number of amino acids: Translated: 467; Mature: 466

Protein sequence:

>467_residues
MTTGKIVQIIGAVVDVEFPQGSVPRVYDALNVVDAKERLVLEVQQQIGGGVVRAIVMGSSDGLRRGLTVENTGAPITVPV
GTKTLGRIMNVLGDAIDECGEIGAEEHYSIHRAAPSYEEQANSTELLETGVKVIDLICPFAKGGKIGLFGGAGVGKTVNM
MELINNIALQHSGLSVFAGVGERTREGNDFYFEMQEAGVVNIEHPEESKVAMVYGQMNEPPGNRLRVALTGLTMAERFRD
EGRDVLLFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTRSGSITSVQAVYVPADDLTDPSPATTF
AHLDATVVLNRNIASMGLYPAIDPLDSTSRQLDPLVVGQEHYDIARNVQSTLQRYKELKDIIAILGMDELSEEDKQVVSR
ARKIEKFLTQPYHVAEVFTGDPGIYVSLKDTLAGFKGLLAGDYDDVPEQAFMYCGRIEDALENAKKL

Sequences:

>Translated_467_residues
MTTGKIVQIIGAVVDVEFPQGSVPRVYDALNVVDAKERLVLEVQQQIGGGVVRAIVMGSSDGLRRGLTVENTGAPITVPV
GTKTLGRIMNVLGDAIDECGEIGAEEHYSIHRAAPSYEEQANSTELLETGVKVIDLICPFAKGGKIGLFGGAGVGKTVNM
MELINNIALQHSGLSVFAGVGERTREGNDFYFEMQEAGVVNIEHPEESKVAMVYGQMNEPPGNRLRVALTGLTMAERFRD
EGRDVLLFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTRSGSITSVQAVYVPADDLTDPSPATTF
AHLDATVVLNRNIASMGLYPAIDPLDSTSRQLDPLVVGQEHYDIARNVQSTLQRYKELKDIIAILGMDELSEEDKQVVSR
ARKIEKFLTQPYHVAEVFTGDPGIYVSLKDTLAGFKGLLAGDYDDVPEQAFMYCGRIEDALENAKKL
>Mature_466_residues
TTGKIVQIIGAVVDVEFPQGSVPRVYDALNVVDAKERLVLEVQQQIGGGVVRAIVMGSSDGLRRGLTVENTGAPITVPVG
TKTLGRIMNVLGDAIDECGEIGAEEHYSIHRAAPSYEEQANSTELLETGVKVIDLICPFAKGGKIGLFGGAGVGKTVNMM
ELINNIALQHSGLSVFAGVGERTREGNDFYFEMQEAGVVNIEHPEESKVAMVYGQMNEPPGNRLRVALTGLTMAERFRDE
GRDVLLFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTRSGSITSVQAVYVPADDLTDPSPATTFA
HLDATVVLNRNIASMGLYPAIDPLDSTSRQLDPLVVGQEHYDIARNVQSTLQRYKELKDIIAILGMDELSEEDKQVVSRA
RKIEKFLTQPYHVAEVFTGDPGIYVSLKDTLAGFKGLLAGDYDDVPEQAFMYCGRIEDALENAKKL

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=466, Percent_Identity=66.3090128755365, Blast_Score=619, Evalue=1e-177,
Organism=Homo sapiens, GI19913424, Length=332, Percent_Identity=27.1084337349398, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI19913426, Length=399, Percent_Identity=25.062656641604, Blast_Score=106, Evalue=4e-23,
Organism=Homo sapiens, GI19913428, Length=399, Percent_Identity=24.5614035087719, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI50345984, Length=370, Percent_Identity=24.0540540540541, Blast_Score=98, Evalue=2e-20,
Organism=Homo sapiens, GI4757810, Length=370, Percent_Identity=24.0540540540541, Blast_Score=98, Evalue=2e-20,
Organism=Escherichia coli, GI1790170, Length=467, Percent_Identity=79.8715203426124, Blast_Score=767, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=311, Percent_Identity=29.5819935691318, Blast_Score=122, Evalue=6e-29,
Organism=Escherichia coli, GI1790172, Length=389, Percent_Identity=24.1645244215938, Blast_Score=107, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI25144756, Length=466, Percent_Identity=64.3776824034335, Blast_Score=602, Evalue=1e-173,
Organism=Caenorhabditis elegans, GI17565854, Length=322, Percent_Identity=28.8819875776398, Blast_Score=111, Evalue=8e-25,
Organism=Caenorhabditis elegans, GI17570191, Length=418, Percent_Identity=24.8803827751196, Blast_Score=105, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI17510931, Length=360, Percent_Identity=25.5555555555556, Blast_Score=104, Evalue=9e-23,
Organism=Caenorhabditis elegans, GI71988080, Length=374, Percent_Identity=24.5989304812834, Blast_Score=100, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI71988063, Length=374, Percent_Identity=24.5989304812834, Blast_Score=100, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI71988074, Length=379, Percent_Identity=22.9551451187335, Blast_Score=77, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6322581, Length=460, Percent_Identity=66.0869565217391, Blast_Score=619, Evalue=1e-178,
Organism=Saccharomyces cerevisiae, GI6319603, Length=417, Percent_Identity=25.6594724220624, Blast_Score=112, Evalue=1e-25,
Organism=Saccharomyces cerevisiae, GI6319370, Length=409, Percent_Identity=24.6943765281174, Blast_Score=95, Evalue=2e-20,
Organism=Saccharomyces cerevisiae, GI6320016, Length=253, Percent_Identity=26.8774703557312, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24638766, Length=465, Percent_Identity=64.7311827956989, Blast_Score=603, Evalue=1e-172,
Organism=Drosophila melanogaster, GI28574560, Length=466, Percent_Identity=62.6609442060086, Blast_Score=574, Evalue=1e-164,
Organism=Drosophila melanogaster, GI20129479, Length=318, Percent_Identity=27.3584905660377, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24583992, Length=311, Percent_Identity=28.6173633440514, Blast_Score=110, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24583988, Length=322, Percent_Identity=28.2608695652174, Blast_Score=108, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24583986, Length=322, Percent_Identity=28.2608695652174, Blast_Score=108, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24583984, Length=322, Percent_Identity=28.2608695652174, Blast_Score=108, Evalue=1e-23,
Organism=Drosophila melanogaster, GI281361666, Length=398, Percent_Identity=24.8743718592965, Blast_Score=101, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24646341, Length=398, Percent_Identity=24.8743718592965, Blast_Score=101, Evalue=1e-21,
Organism=Drosophila melanogaster, GI17136796, Length=398, Percent_Identity=24.8743718592965, Blast_Score=101, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24658560, Length=371, Percent_Identity=23.1805929919137, Blast_Score=99, Evalue=4e-21,
Organism=Drosophila melanogaster, GI24638768, Length=91, Percent_Identity=52.7472527472528, Blast_Score=88, Evalue=1e-17,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 50688; Mature: 50557

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTGKIVQIIGAVVDVEFPQGSVPRVYDALNVVDAKERLVLEVQQQIGGGVVRAIVMGSS
CCCHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCC
DGLRRGLTVENTGAPITVPVGTKTLGRIMNVLGDAIDECGEIGAEEHYSIHRAAPSYEEQ
CCHHCCCEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHCCCCCHHHH
ANSTELLETGVKVIDLICPFAKGGKIGLFGGAGVGKTVNMMELINNIALQHSGLSVFAGV
CCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECC
GERTREGNDFYFEMQEAGVVNIEHPEESKVAMVYGQMNEPPGNRLRVALTGLTMAERFRD
CCCCCCCCCEEEEEECCCEEEECCCCCCCEEEEEECCCCCCCCEEEEEEECHHHHHHHHH
EGRDVLLFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTRSGSITS
CCCEEEEEEECHHHEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEE
VQAVYVPADDLTDPSPATTFAHLDATVVLNRNIASMGLYPAIDPLDSTSRQLDPLVVGQE
EEEEEECCCCCCCCCCCCEEEECCEEEEEECCHHHCCCCCCCCCCCCCHHHCCCEEECCH
HYDIARNVQSTLQRYKELKDIIAILGMDELSEEDKQVVSRARKIEKFLTQPYHVAEVFTG
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
DPGIYVSLKDTLAGFKGLLAGDYDDVPEQAFMYCGRIEDALENAKKL
CCCEEEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TTGKIVQIIGAVVDVEFPQGSVPRVYDALNVVDAKERLVLEVQQQIGGGVVRAIVMGSS
CCHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCC
DGLRRGLTVENTGAPITVPVGTKTLGRIMNVLGDAIDECGEIGAEEHYSIHRAAPSYEEQ
CCHHCCCEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHCCCCCHHHH
ANSTELLETGVKVIDLICPFAKGGKIGLFGGAGVGKTVNMMELINNIALQHSGLSVFAGV
CCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECC
GERTREGNDFYFEMQEAGVVNIEHPEESKVAMVYGQMNEPPGNRLRVALTGLTMAERFRD
CCCCCCCCCEEEEEECCCEEEECCCCCCCEEEEEECCCCCCCCEEEEEEECHHHHHHHHH
EGRDVLLFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTRSGSITS
CCCEEEEEEECHHHEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEE
VQAVYVPADDLTDPSPATTFAHLDATVVLNRNIASMGLYPAIDPLDSTSRQLDPLVVGQE
EEEEEECCCCCCCCCCCCEEEECCEEEEEECCHHHCCCCCCCCCCCCCHHHCCCEEECCH
HYDIARNVQSTLQRYKELKDIIAILGMDELSEEDKQVVSRARKIEKFLTQPYHVAEVFTG
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
DPGIYVSLKDTLAGFKGLLAGDYDDVPEQAFMYCGRIEDALENAKKL
CCCEEEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA