Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209696427

Identifier: 209696427

GI number: 209696427

Start: 3291945

End: 3292262

Strand: Direct

Name: 209696427

Synonym: VSAL_I3040

Alternate gene names: NA

Gene position: 3291945-3292262 (Clockwise)

Preceding gene: 209696426

Following gene: 209696428

Centisome position: 99.0

GC content: 33.33

Gene sequence:

>318_bases
ATGTTGTTGTGGTCCTTACTCCCTGATCTCTACTTATTTGATAAAATACCAAGTCAAATGTTTGTGCTTCAGGTGTTTAT
TTTCTTTGTGATTTTGTTTTACAAGACTATAAGAAACAACTTTGTACGCTGTTATAAAGTTGAGCCGTTTGTTACAACGG
CCTCTCTTGAAAGCACGTTCTTACCTGTGGTGTTTTTTATTGGGTTGCAATTTATACCAGACTATGCGTTTTCACTTTGT
ACCACCTTAATGTCCTTCTTTTTAATTTGGACATTAAGAGTAGAATGTAAATTTATGGAGTCATTGAAAAATGATTAA

Upstream 100 bases:

>100_bases
TCCTTACCTTGAACTTTGAGCATTATATGCCTGTTTAGTTCCTTTTCATGCGACAGAACCGATTTCCTTGTGTATTCTGG
CCCTAGGTTATTCAGTCTTT

Downstream 100 bases:

>100_bases
AGTAATAGTGTTATCTCTGAAAGATTCACCTCGTCGTGCAATCATCACAGAGAGACTAAAGAAACGTGGCATTACAGATT
TCGAGTTCTATGATGCTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 105; Mature: 105

Protein sequence:

>105_residues
MLLWSLLPDLYLFDKIPSQMFVLQVFIFFVILFYKTIRNNFVRCYKVEPFVTTASLESTFLPVVFFIGLQFIPDYAFSLC
TTLMSFFLIWTLRVECKFMESLKND

Sequences:

>Translated_105_residues
MLLWSLLPDLYLFDKIPSQMFVLQVFIFFVILFYKTIRNNFVRCYKVEPFVTTASLESTFLPVVFFIGLQFIPDYAFSLC
TTLMSFFLIWTLRVECKFMESLKND
>Mature_105_residues
MLLWSLLPDLYLFDKIPSQMFVLQVFIFFVILFYKTIRNNFVRCYKVEPFVTTASLESTFLPVVFFIGLQFIPDYAFSLC
TTLMSFFLIWTLRVECKFMESLKND

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12542; Mature: 12542

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLWSLLPDLYLFDKIPSQMFVLQVFIFFVILFYKTIRNNFVRCYKVEPFVTTASLESTF
CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHH
LPVVFFIGLQFIPDYAFSLCTTLMSFFLIWTLRVECKFMESLKND
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLLWSLLPDLYLFDKIPSQMFVLQVFIFFVILFYKTIRNNFVRCYKVEPFVTTASLESTF
CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHH
LPVVFFIGLQFIPDYAFSLCTTLMSFFLIWTLRVECKFMESLKND
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA