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The map label for this gene is rbn [C]

Identifier: 209696335

GI number: 209696335

Start: 3183281

End: 3184213

Strand: Reverse

Name: rbn [C]

Synonym: VSAL_I2938

Alternate gene names: 209696335

Gene position: 3184213-3183281 (Counterclockwise)

Preceding gene: 209696336

Following gene: 209696334

Centisome position: 95.76

GC content: 39.01

Gene sequence:

>933_bases
ATGGAAGAGAAGTTTAAATATTCGCTAAGGATTAGCTGGTCATATTTTTTATTTTTAAAGCAACGCATTATTCATGACCG
ATTAACGGTCAGTGCGGGTTATATGGCCTATATTACGTTGTTATCATTGGTTCCTTTAGTCACTGTCTTACTTTCTGTGT
TATCTCAGTTTCCTATTTTTTCAGGAGCTGGAGAGACAGTACAAGAGTTTGTTATTCAGAACTTTGTACCAGCCGCCAGT
GATGCGGTTGAAGGAAGTCTGAAAGAATTTATTTCAAATACGGGCAAGATGACTGCCGTCGGGTCTGGGTTCTTATTTGT
TGCCTCTGTGATGTTGATATCGGCAATTGACCGTAGCTTGAATTACATTTGGCGAGTGAAGAAAAAGCGTCGTCCAATGT
ATTCATTTTCATTGTATTGGATGATTTTAACCTTAGGTCCATTATTGGTTTGGGCTAGCTTAGCGGCGACATCGTATGTG
ACGTCATTAAACATTATGGATGATGAAATCGTCTCCAGTTTTTATCGAACGCTGCTGGGGTGGTTACCTATTATTTTGTC
ATTCTCAGCATTTTTAGGCTTGTATTTACTGGTTCCAAATAAAAAAATACGAGTAAGACACGCGCTTGTTGGTGCGATGT
CAGCAGGGTGCTTGTTTGAAGTCAGCAAGGTGGGTTTTGCACAATACATTACGCAATTTCCATCTTATGAAGTTATTTAT
GGCGCTTTAGCGGCGGTACCGATTCTATTTGTATGGATTTATCTGTGTTGGATCATTGTGTTAATTGGTGCAGAAATCAC
TGCAAGTCTGGGTGAATCCGATCAGTGGTTGATAGATAAAATAAATACGCATGTATTTGATGCTGAGAATACGGTATTAA
CAGAATCAAAAGGATTAACAGAAAGTGATAGCACTGATCCAAAGAGTAAGTGA

Upstream 100 bases:

>100_bases
TTGTAAATTGAATAAATATCAAATCCCTTTGTAGGCAACTACGAAGGGATTTTTTTTATCTGTTATGATAAATAAAGGCA
ATTTTAAAGAGTCAGATATT

Downstream 100 bases:

>100_bases
AGCCTCAGTACGTGTTGATGGCGAGATCACAGGTGAAATTAATCAAGGTTTATTAATATTACTTGGTGTTGAAAGAGAAG
ACGATGAAGCGAAAGCGAAG

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MEEKFKYSLRISWSYFLFLKQRIIHDRLTVSAGYMAYITLLSLVPLVTVLLSVLSQFPIFSGAGETVQEFVIQNFVPAAS
DAVEGSLKEFISNTGKMTAVGSGFLFVASVMLISAIDRSLNYIWRVKKKRRPMYSFSLYWMILTLGPLLVWASLAATSYV
TSLNIMDDEIVSSFYRTLLGWLPIILSFSAFLGLYLLVPNKKIRVRHALVGAMSAGCLFEVSKVGFAQYITQFPSYEVIY
GALAAVPILFVWIYLCWIIVLIGAEITASLGESDQWLIDKINTHVFDAENTVLTESKGLTESDSTDPKSK

Sequences:

>Translated_310_residues
MEEKFKYSLRISWSYFLFLKQRIIHDRLTVSAGYMAYITLLSLVPLVTVLLSVLSQFPIFSGAGETVQEFVIQNFVPAAS
DAVEGSLKEFISNTGKMTAVGSGFLFVASVMLISAIDRSLNYIWRVKKKRRPMYSFSLYWMILTLGPLLVWASLAATSYV
TSLNIMDDEIVSSFYRTLLGWLPIILSFSAFLGLYLLVPNKKIRVRHALVGAMSAGCLFEVSKVGFAQYITQFPSYEVIY
GALAAVPILFVWIYLCWIIVLIGAEITASLGESDQWLIDKINTHVFDAENTVLTESKGLTESDSTDPKSK
>Mature_310_residues
MEEKFKYSLRISWSYFLFLKQRIIHDRLTVSAGYMAYITLLSLVPLVTVLLSVLSQFPIFSGAGETVQEFVIQNFVPAAS
DAVEGSLKEFISNTGKMTAVGSGFLFVASVMLISAIDRSLNYIWRVKKKRRPMYSFSLYWMILTLGPLLVWASLAATSYV
TSLNIMDDEIVSSFYRTLLGWLPIILSFSAFLGLYLLVPNKKIRVRHALVGAMSAGCLFEVSKVGFAQYITQFPSYEVIY
GALAAVPILFVWIYLCWIIVLIGAEITASLGESDQWLIDKINTHVFDAENTVLTESKGLTESDSTDPKSK

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family

Homologues:

Organism=Escherichia coli, GI1790319, Length=272, Percent_Identity=47.0588235294118, Blast_Score=253, Evalue=1e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2938_ALISL (B6EGQ7)

Other databases:

- EMBL:   FM178379
- RefSeq:   YP_002264266.1
- GeneID:   6988430
- GenomeReviews:   FM178379_GR
- KEGG:   vsa:VSAL_I2938
- HOGENOM:   HBG451793
- OMA:   ELAQIQV
- ProtClustDB:   PRK01637
- HAMAP:   MF_00672
- InterPro:   IPR017039
- InterPro:   IPR004664
- PIRSF:   PIRSF035875
- TIGRFAMs:   TIGR00765

Pfam domain/function: PF03631 Ribonuclease_BN

EC number: 3.1.-.- [C]

Molecular weight: Translated: 34708; Mature: 34708

Theoretical pI: Translated: 8.15; Mature: 8.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x22e659f8)-; HASH(0x2310c19c)-; HASH(0x1f52d198)-; HASH(0x21e4f544)-; HASH(0x22ce1158)-; HASH(0x2314c4d8)-;

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCCCCH
>Mature Secondary Structure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CCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA