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The map label for this gene is ubiC [H]

Identifier: 209696295

GI number: 209696295

Start: 3143231

End: 3143803

Strand: Reverse

Name: ubiC [H]

Synonym: VSAL_I2896

Alternate gene names: 209696295

Gene position: 3143803-3143231 (Counterclockwise)

Preceding gene: 209696297

Following gene: 209696294

Centisome position: 94.55

GC content: 39.97

Gene sequence:

>573_bases
ATGTCAGAGATCAATTCTTGGTGTGCTTCTGTGCTTAAAAAAGTGCAGTGGCAAGACGCCGATACGTTTGCGTGTAGCAA
TGAATGGCAACAGTATTGGCTGTTAGGCTTAGATTCGTTGTCACGCCGTTTAGAACAACATTGCCAAGTGTTGTCTGTAT
CGGTATTGGATAATACACATGTTGATTCCAGCGCTTTAAGAGCAGATGAAATTGCCCTTATTGGCGATGGAGTGTGCCTA
AGACGTAAAGTTGTTTTACGAGGTGATGCTGTCGATTGGATTTACGGGAGAACATTAATACCGTTATCTTCTTTACAAGA
TCAGCCCCACGATTTAACGAAACAAGGTCATGTACCGTTAGGCATTACTGTTTTTAGTGCTCAAGACGTTTTTAGAGATC
AATTACAAGTGGCAAAAATTTTAACCGAGAAGGGGGAGTTGTTTGCTCGTCGTTCTCGTTTGTGGATGAATGGAAAGCCA
ATGTTGGTGGCGGAATTATTTTTACCTAACGCATCTATTTATTCGGATAATTATTATTTAGAAAAAAACAATTCAAAGGG
AAGTGAAGAATGA

Upstream 100 bases:

>100_bases
AATTTATTTTATTACTTGTTACAATAGTCGGCCGTTGTGAGAAAAAATTAACCGTAATCTCTCAATATTATTGATATATG
TGAGAGATGTTATAGAGAAT

Downstream 100 bases:

>100_bases
CTCTGTCAAAAGCGAAGGCGTTTTGGCAATTAACGAGAATGAATCGTCCGATTGGCTCGTTGTTATTGTTATGGCCAACA
TTGTGGGCTTTATTTTTGGC

Product: chorismate--pyruvate lyase

Products: NA

Alternate protein names: CL; CPL [H]

Number of amino acids: Translated: 190; Mature: 189

Protein sequence:

>190_residues
MSEINSWCASVLKKVQWQDADTFACSNEWQQYWLLGLDSLSRRLEQHCQVLSVSVLDNTHVDSSALRADEIALIGDGVCL
RRKVVLRGDAVDWIYGRTLIPLSSLQDQPHDLTKQGHVPLGITVFSAQDVFRDQLQVAKILTEKGELFARRSRLWMNGKP
MLVAELFLPNASIYSDNYYLEKNNSKGSEE

Sequences:

>Translated_190_residues
MSEINSWCASVLKKVQWQDADTFACSNEWQQYWLLGLDSLSRRLEQHCQVLSVSVLDNTHVDSSALRADEIALIGDGVCL
RRKVVLRGDAVDWIYGRTLIPLSSLQDQPHDLTKQGHVPLGITVFSAQDVFRDQLQVAKILTEKGELFARRSRLWMNGKP
MLVAELFLPNASIYSDNYYLEKNNSKGSEE
>Mature_189_residues
SEINSWCASVLKKVQWQDADTFACSNEWQQYWLLGLDSLSRRLEQHCQVLSVSVLDNTHVDSSALRADEIALIGDGVCLR
RKVVLRGDAVDWIYGRTLIPLSSLQDQPHDLTKQGHVPLGITVFSAQDVFRDQLQVAKILTEKGELFARRSRLWMNGKPM
LVAELFLPNASIYSDNYYLEKNNSKGSEE

Specific function: Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4- hydroxybenzoate (4HB) for the ubiquinone pathway [H]

COG id: COG3161

COG function: function code H; 4-hydroxybenzoate synthetase (chorismate lyase)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiC family [H]

Homologues:

Organism=Escherichia coli, GI87082361, Length=142, Percent_Identity=33.0985915492958, Blast_Score=89, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007440 [H]

Pfam domain/function: PF04345 Chor_lyase [H]

EC number: =4.1.3.40 [H]

Molecular weight: Translated: 21571; Mature: 21440

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEINSWCASVLKKVQWQDADTFACSNEWQQYWLLGLDSLSRRLEQHCQVLSVSVLDNTH
CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCC
VDSSALRADEIALIGDGVCLRRKVVLRGDAVDWIYGRTLIPLSSLQDQPHDLTKQGHVPL
CCHHHHCCCCEEEEECCHHHEEEEEEECCCCHHHHCCEECCHHHCCCCCCCHHHCCCCCE
GITVFSAQDVFRDQLQVAKILTEKGELFARRSRLWMNGKPMLVAELFLPNASIYSDNYYL
EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEEECCCCEEECCCEEE
EKNNSKGSEE
ECCCCCCCCC
>Mature Secondary Structure 
SEINSWCASVLKKVQWQDADTFACSNEWQQYWLLGLDSLSRRLEQHCQVLSVSVLDNTH
CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCC
VDSSALRADEIALIGDGVCLRRKVVLRGDAVDWIYGRTLIPLSSLQDQPHDLTKQGHVPL
CCHHHHCCCCEEEEECCHHHEEEEEEECCCCHHHHCCEECCHHHCCCCCCCHHHCCCCCE
GITVFSAQDVFRDQLQVAKILTEKGELFARRSRLWMNGKPMLVAELFLPNASIYSDNYYL
EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEEECCCCEEECCCEEE
EKNNSKGSEE
ECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA