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The map label for this gene is agmR [H]

Identifier: 209696228

GI number: 209696228

Start: 3058924

End: 3059553

Strand: Direct

Name: agmR [H]

Synonym: VSAL_I2824

Alternate gene names: 209696228

Gene position: 3058924-3059553 (Clockwise)

Preceding gene: 209696225

Following gene: 209696229

Centisome position: 91.99

GC content: 42.38

Gene sequence:

>630_bases
ATGGACGACAACTACACCATCATTATCGCGGACGATCATCCCTTATTTCGCAATGCGCTTTTTCAATCCATTCATATGGC
GATCAGCGGAGCCAATCTACTCGAAGCCGATTCTCTAGATGCACTCTTAACCGTATTAGAAAAAGAGCCCGATCCCGACT
TATTATTACTCGATCTTAAAATGCCGGGCAGTAACGGAATGTCTGGTTTAATTCACCTTCGCTCTCAATATCCAGACCTG
CCTATTGTGGTTGTCTCTGCCAGCGAAGAAAGCAGCATTGTCTCTCAAGCAAAGAGCCATGGGGCTTTTGGCTTTATTCC
AAAATCAAGTGACATGCGATCATTAATTTCAGCGTTGAACCAAATTTTGGCAGGGGATTCTTATTTTCCAGAAGGCTCAA
TTAAAAACAACCAGGCGTGTGATGATCTCGCGACAAGAATCAGCAGTCTTACTCCTCAGCAATATAAAGTGCTTGGTATG
CTGTCAGATGGCCTACTCAACAAGCAAATTGCGTATGATTTAGACGTATCAGAAGCAACGATCAAAGCTCACATGACCGC
AATTTTTCGAAAATTAGGCGTAAAAAATCGTACTCAAGCGGTTATTTTTCTACAACAGACTGAAAGTTAA

Upstream 100 bases:

>100_bases
ATAAGATTAGAGAGACAGCGCAGACTTTAGCGTCTAAAAATTGCTCGAAAATGGGTTAGATGTTAATTTTATTAGATTAC
TCATGAGGAATTTTGTAGCC

Downstream 100 bases:

>100_bases
CCTCGATATAACACTCTAGCCTATAAATTAAGGTAATCTATAGGTCTCTTTTGTATCCCTCTGTTTAACTTAACTCTGGG
AGAGTTCATGATAAGTATCC

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: Protein AgmR [H]

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MDDNYTIIIADDHPLFRNALFQSIHMAISGANLLEADSLDALLTVLEKEPDPDLLLLDLKMPGSNGMSGLIHLRSQYPDL
PIVVVSASEESSIVSQAKSHGAFGFIPKSSDMRSLISALNQILAGDSYFPEGSIKNNQACDDLATRISSLTPQQYKVLGM
LSDGLLNKQIAYDLDVSEATIKAHMTAIFRKLGVKNRTQAVIFLQQTES

Sequences:

>Translated_209_residues
MDDNYTIIIADDHPLFRNALFQSIHMAISGANLLEADSLDALLTVLEKEPDPDLLLLDLKMPGSNGMSGLIHLRSQYPDL
PIVVVSASEESSIVSQAKSHGAFGFIPKSSDMRSLISALNQILAGDSYFPEGSIKNNQACDDLATRISSLTPQQYKVLGM
LSDGLLNKQIAYDLDVSEATIKAHMTAIFRKLGVKNRTQAVIFLQQTES
>Mature_209_residues
MDDNYTIIIADDHPLFRNALFQSIHMAISGANLLEADSLDALLTVLEKEPDPDLLLLDLKMPGSNGMSGLIHLRSQYPDL
PIVVVSASEESSIVSQAKSHGAFGFIPKSSDMRSLISALNQILAGDSYFPEGSIKNNQACDDLATRISSLTPQQYKVLGM
LSDGLLNKQIAYDLDVSEATIKAHMTAIFRKLGVKNRTQAVIFLQQTES

Specific function: Positive activator for glycerol metabolism [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=207, Percent_Identity=34.2995169082126, Blast_Score=94, Evalue=6e-21,
Organism=Escherichia coli, GI1786747, Length=192, Percent_Identity=28.125, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI1787473, Length=208, Percent_Identity=33.6538461538462, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI1789937, Length=198, Percent_Identity=26.7676767676768, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI1788712, Length=212, Percent_Identity=28.7735849056604, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1788546, Length=205, Percent_Identity=28.2926829268293, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1790102, Length=194, Percent_Identity=28.3505154639175, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 22793; Mature: 22793

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDNYTIIIADDHPLFRNALFQSIHMAISGANLLEADSLDALLTVLEKEPDPDLLLLDLK
CCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEE
MPGSNGMSGLIHLRSQYPDLPIVVVSASEESSIVSQAKSHGAFGFIPKSSDMRSLISALN
CCCCCCCHHEEEECCCCCCCCEEEEECCCHHHHHHHHHHCCCEEECCCCHHHHHHHHHHH
QILAGDSYFPEGSIKNNQACDDLATRISSLTPQQYKVLGMLSDGLLNKQIAYDLDVSEAT
HHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEECCCCHHH
IKAHMTAIFRKLGVKNRTQAVIFLQQTES
HHHHHHHHHHHHCCCCCCEEEEEEEECCC
>Mature Secondary Structure
MDDNYTIIIADDHPLFRNALFQSIHMAISGANLLEADSLDALLTVLEKEPDPDLLLLDLK
CCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEE
MPGSNGMSGLIHLRSQYPDLPIVVVSASEESSIVSQAKSHGAFGFIPKSSDMRSLISALN
CCCCCCCHHEEEECCCCCCCCEEEEECCCHHHHHHHHHHCCCEEECCCCHHHHHHHHHHH
QILAGDSYFPEGSIKNNQACDDLATRISSLTPQQYKVLGMLSDGLLNKQIAYDLDVSEAT
HHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEECCCCHHH
IKAHMTAIFRKLGVKNRTQAVIFLQQTES
HHHHHHHHHHHHCCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938886; 10984043 [H]