Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209696142

Identifier: 209696142

GI number: 209696142

Start: 2962238

End: 2963032

Strand: Direct

Name: 209696142

Synonym: VSAL_I2736

Alternate gene names: NA

Gene position: 2962238-2963032 (Clockwise)

Preceding gene: 209696141

Following gene: 209696144

Centisome position: 89.09

GC content: 38.74

Gene sequence:

>795_bases
ATGAATAATGTGAATTCTTTATTTTCGGCACTATGGCAAGATTATGTCGTTCGGCTATCTCCTTCTGCTGGGAAGGTTCG
ACAATTACTGTCTGGCGGTGACGAGATTATTAATGATCACATCGCATTAAGAACGTTTAATCTATCTAAAGTGGGTTTAT
CTACGTTAGCGGCGCCATTTTTAGCGATGGGCTATAAAGCGTGTGATGAATATGAGTTTGTTGCTAAAAAATTAAAAGCT
CAACATTTCGAACACCCAGATCCAAAAGCGCCTAAAGTGTTTATTAGTGAATTATTAGTTGAGGAACTTTCTGTTCAGGC
TCAAGATATTATTCATAAATTAGTTAAACAAGTGCCTGCCCACTATTTTGTTAGTAATGACTTTTTGTCTTCTGGCCGAC
CTTGGTCATTAAGTTATGAAGAGTACGAAACGTTAGCAAAAGAAAGTGAATACGCTTCTTGGTTGGCGGCTCATGGTTAT
GGGGCAAATCATTTTACTGTGTATGTTAATCAGTTGGATGGTTTTGATAGCGTGGTGGATGTAAATCAACATCTTCGAAA
AGCGGGTTTTTCTATTAATGAAGTTGGTGGAGAAGTAAAAGGATCTCCTGAGGTTCATTTAGAGCAGTCCTCAACGATGG
CTGATAAAGTAACCGTAAACTTTACTGAGGGTGAATTTGACATTCCGGGTGGTTTTTATGAGTTTGCCAAACGTTATGCC
TTACCTACAGGGGAATTATATCAAGGGTTTGTTGAGGCTTCTGCGGATAAGATTTTTGAAAGTACCGATGGGTAA

Upstream 100 bases:

>100_bases
GGCAGATTATTGTGCTTATCCAATGGCATCGATGGAAGGTGATGCGTGTGAAATTCCTGCACAATTATCTCCAGGACTAA
CTCTTTAAGAGGTAACGAGT

Downstream 100 bases:

>100_bases
CCTAAGTCTTTAGGTCGTAAAGTCTACTCATAAAAAAACGCAGCTTATGGGCTGCGTTTTTATTTGTTTATGGTTACCGT
TAAATTAACGAGTGCCGTAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MNNVNSLFSALWQDYVVRLSPSAGKVRQLLSGGDEIINDHIALRTFNLSKVGLSTLAAPFLAMGYKACDEYEFVAKKLKA
QHFEHPDPKAPKVFISELLVEELSVQAQDIIHKLVKQVPAHYFVSNDFLSSGRPWSLSYEEYETLAKESEYASWLAAHGY
GANHFTVYVNQLDGFDSVVDVNQHLRKAGFSINEVGGEVKGSPEVHLEQSSTMADKVTVNFTEGEFDIPGGFYEFAKRYA
LPTGELYQGFVEASADKIFESTDG

Sequences:

>Translated_264_residues
MNNVNSLFSALWQDYVVRLSPSAGKVRQLLSGGDEIINDHIALRTFNLSKVGLSTLAAPFLAMGYKACDEYEFVAKKLKA
QHFEHPDPKAPKVFISELLVEELSVQAQDIIHKLVKQVPAHYFVSNDFLSSGRPWSLSYEEYETLAKESEYASWLAAHGY
GANHFTVYVNQLDGFDSVVDVNQHLRKAGFSINEVGGEVKGSPEVHLEQSSTMADKVTVNFTEGEFDIPGGFYEFAKRYA
LPTGELYQGFVEASADKIFESTDG
>Mature_264_residues
MNNVNSLFSALWQDYVVRLSPSAGKVRQLLSGGDEIINDHIALRTFNLSKVGLSTLAAPFLAMGYKACDEYEFVAKKLKA
QHFEHPDPKAPKVFISELLVEELSVQAQDIIHKLVKQVPAHYFVSNDFLSSGRPWSLSYEEYETLAKESEYASWLAAHGY
GANHFTVYVNQLDGFDSVVDVNQHLRKAGFSINEVGGEVKGSPEVHLEQSSTMADKVTVNFTEGEFDIPGGFYEFAKRYA
LPTGELYQGFVEASADKIFESTDG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29361; Mature: 29361

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNVNSLFSALWQDYVVRLSPSAGKVRQLLSGGDEIINDHIALRTFNLSKVGLSTLAAPF
CCCHHHHHHHHHHHHHEEECCCHHHHHHHHCCCHHHHHCCCEEEECCCHHHHHHHHHHHH
LAMGYKACDEYEFVAKKLKAQHFEHPDPKAPKVFISELLVEELSVQAQDIIHKLVKQVPA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
HYFVSNDFLSSGRPWSLSYEEYETLAKESEYASWLAAHGYGANHFTVYVNQLDGFDSVVD
HHEECCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHH
VNQHLRKAGFSINEVGGEVKGSPEVHLEQSSTMADKVTVNFTEGEFDIPGGFYEFAKRYA
HHHHHHHHCCCHHHCCCCCCCCCCEEEECCCCCCCEEEEEEECCCEECCCHHHHHHHHHC
LPTGELYQGFVEASADKIFESTDG
CCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNNVNSLFSALWQDYVVRLSPSAGKVRQLLSGGDEIINDHIALRTFNLSKVGLSTLAAPF
CCCHHHHHHHHHHHHHEEECCCHHHHHHHHCCCHHHHHCCCEEEECCCHHHHHHHHHHHH
LAMGYKACDEYEFVAKKLKAQHFEHPDPKAPKVFISELLVEELSVQAQDIIHKLVKQVPA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
HYFVSNDFLSSGRPWSLSYEEYETLAKESEYASWLAAHGYGANHFTVYVNQLDGFDSVVD
HHEECCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHH
VNQHLRKAGFSINEVGGEVKGSPEVHLEQSSTMADKVTVNFTEGEFDIPGGFYEFAKRYA
HHHHHHHHCCCHHHCCCCCCCCCCEEEECCCCCCCEEEEEEECCCEECCCHHHHHHHHHC
LPTGELYQGFVEASADKIFESTDG
CCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA