Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209696107

Identifier: 209696107

GI number: 209696107

Start: 2924023

End: 2924424

Strand: Direct

Name: 209696107

Synonym: VSAL_I2700

Alternate gene names: NA

Gene position: 2924023-2924424 (Clockwise)

Preceding gene: 209696106

Following gene: 209696108

Centisome position: 87.94

GC content: 35.32

Gene sequence:

>402_bases
ATGTCGAATAAAACAAATAAAGGCATTTGGTTTGCCTACATTGCCAGCCTTCTTACTCCGTTAACATTAATGGTCTCAGG
TATTGTTGCCATCATATACGCTGGTTATCAAATGAATAAAGGGACTAATGACGAAGTCATTAATAGTCACTACTATGCCA
TTATCAAGAGCTTCTTTTTGTTTCTCACTTTCTTTGTTGTTCTTGGTGTTACTGCTGCAACAATGAGTGGAATGGTTGCC
GGCTTAGAGTACTGGGTACATAGCTCTATTTTAGAGAAAATCTATTCTGCTATTCCCGTTATTGGTGCAATAATTTCATT
ATTAGCAATTGGGACTTGGTTTGTAAAATTAGCTAAAGGTATGCAAAAACTTAAGGCATATCAACCAATTGAAAATCAAT
AA

Upstream 100 bases:

>100_bases
TAAAACCTTAACTCTCCCCTCACCACTATTTTTGCAGGTATATTCCCACACAAAGAATAGGTATATACTTGCGGAACAAT
TTAATAATTGGATAACTACC

Downstream 100 bases:

>100_bases
TAAAAAGGCACTCTATGTGCCTTTTTTGATTTGTAAAATAAATATTTGCTAACGAACATAACAACAAGAAAGTGATCTTC
ATCAGTTTTACTGTTAGAAT

Product: membrane protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 133; Mature: 132

Protein sequence:

>133_residues
MSNKTNKGIWFAYIASLLTPLTLMVSGIVAIIYAGYQMNKGTNDEVINSHYYAIIKSFFLFLTFFVVLGVTAATMSGMVA
GLEYWVHSSILEKIYSAIPVIGAIISLLAIGTWFVKLAKGMQKLKAYQPIENQ

Sequences:

>Translated_133_residues
MSNKTNKGIWFAYIASLLTPLTLMVSGIVAIIYAGYQMNKGTNDEVINSHYYAIIKSFFLFLTFFVVLGVTAATMSGMVA
GLEYWVHSSILEKIYSAIPVIGAIISLLAIGTWFVKLAKGMQKLKAYQPIENQ
>Mature_132_residues
SNKTNKGIWFAYIASLLTPLTLMVSGIVAIIYAGYQMNKGTNDEVINSHYYAIIKSFFLFLTFFVVLGVTAATMSGMVAG
LEYWVHSSILEKIYSAIPVIGAIISLLAIGTWFVKLAKGMQKLKAYQPIENQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14695; Mature: 14563

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNKTNKGIWFAYIASLLTPLTLMVSGIVAIIYAGYQMNKGTNDEVINSHYYAIIKSFFL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
FLTFFVVLGVTAATMSGMVAGLEYWVHSSILEKIYSAIPVIGAIISLLAIGTWFVKLAKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MQKLKAYQPIENQ
HHHHHHCCCCCCC
>Mature Secondary Structure 
SNKTNKGIWFAYIASLLTPLTLMVSGIVAIIYAGYQMNKGTNDEVINSHYYAIIKSFFL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
FLTFFVVLGVTAATMSGMVAGLEYWVHSSILEKIYSAIPVIGAIISLLAIGTWFVKLAKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MQKLKAYQPIENQ
HHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA