| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209696107
Identifier: 209696107
GI number: 209696107
Start: 2924023
End: 2924424
Strand: Direct
Name: 209696107
Synonym: VSAL_I2700
Alternate gene names: NA
Gene position: 2924023-2924424 (Clockwise)
Preceding gene: 209696106
Following gene: 209696108
Centisome position: 87.94
GC content: 35.32
Gene sequence:
>402_bases ATGTCGAATAAAACAAATAAAGGCATTTGGTTTGCCTACATTGCCAGCCTTCTTACTCCGTTAACATTAATGGTCTCAGG TATTGTTGCCATCATATACGCTGGTTATCAAATGAATAAAGGGACTAATGACGAAGTCATTAATAGTCACTACTATGCCA TTATCAAGAGCTTCTTTTTGTTTCTCACTTTCTTTGTTGTTCTTGGTGTTACTGCTGCAACAATGAGTGGAATGGTTGCC GGCTTAGAGTACTGGGTACATAGCTCTATTTTAGAGAAAATCTATTCTGCTATTCCCGTTATTGGTGCAATAATTTCATT ATTAGCAATTGGGACTTGGTTTGTAAAATTAGCTAAAGGTATGCAAAAACTTAAGGCATATCAACCAATTGAAAATCAAT AA
Upstream 100 bases:
>100_bases TAAAACCTTAACTCTCCCCTCACCACTATTTTTGCAGGTATATTCCCACACAAAGAATAGGTATATACTTGCGGAACAAT TTAATAATTGGATAACTACC
Downstream 100 bases:
>100_bases TAAAAAGGCACTCTATGTGCCTTTTTTGATTTGTAAAATAAATATTTGCTAACGAACATAACAACAAGAAAGTGATCTTC ATCAGTTTTACTGTTAGAAT
Product: membrane protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 133; Mature: 132
Protein sequence:
>133_residues MSNKTNKGIWFAYIASLLTPLTLMVSGIVAIIYAGYQMNKGTNDEVINSHYYAIIKSFFLFLTFFVVLGVTAATMSGMVA GLEYWVHSSILEKIYSAIPVIGAIISLLAIGTWFVKLAKGMQKLKAYQPIENQ
Sequences:
>Translated_133_residues MSNKTNKGIWFAYIASLLTPLTLMVSGIVAIIYAGYQMNKGTNDEVINSHYYAIIKSFFLFLTFFVVLGVTAATMSGMVA GLEYWVHSSILEKIYSAIPVIGAIISLLAIGTWFVKLAKGMQKLKAYQPIENQ >Mature_132_residues SNKTNKGIWFAYIASLLTPLTLMVSGIVAIIYAGYQMNKGTNDEVINSHYYAIIKSFFLFLTFFVVLGVTAATMSGMVAG LEYWVHSSILEKIYSAIPVIGAIISLLAIGTWFVKLAKGMQKLKAYQPIENQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14695; Mature: 14563
Theoretical pI: Translated: 9.73; Mature: 9.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNKTNKGIWFAYIASLLTPLTLMVSGIVAIIYAGYQMNKGTNDEVINSHYYAIIKSFFL CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH FLTFFVVLGVTAATMSGMVAGLEYWVHSSILEKIYSAIPVIGAIISLLAIGTWFVKLAKG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MQKLKAYQPIENQ HHHHHHCCCCCCC >Mature Secondary Structure SNKTNKGIWFAYIASLLTPLTLMVSGIVAIIYAGYQMNKGTNDEVINSHYYAIIKSFFL CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH FLTFFVVLGVTAATMSGMVAGLEYWVHSSILEKIYSAIPVIGAIISLLAIGTWFVKLAKG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MQKLKAYQPIENQ HHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA