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The map label for this gene is cobD [H]

Identifier: 209695983

GI number: 209695983

Start: 2758425

End: 2759378

Strand: Direct

Name: cobD [H]

Synonym: VSAL_I2566

Alternate gene names: 209695983

Gene position: 2758425-2759378 (Clockwise)

Preceding gene: 209695982

Following gene: 209695984

Centisome position: 82.96

GC content: 36.9

Gene sequence:

>954_bases
ATGCTTGATAAACTGTCTTTCTTCATCGCCGATTATTCCCTATTAGTTTTATGGGGCGCATTGTTATTTCATTTATTTTT
GCCGATACCTGTTCACGCCCACCCAATGACTATTTGGCGAAAGTTTGCAGAACTATTGTCTACAAAAGTGAATACAGCTC
GATCCTATCAACAACGATTTATTTCAGGCGCTCTTGCCTGGTGCTTAATGATTATCCCTTCATTTATTGTTTGTATTGCT
GCATTACCTATCGTTTGGAATCTTCCCTTATTCAATCTAGGATTACTCTTAATTTCTTTAGAATGGCGAGGGGTTGAAAA
ACTCTGTAAAGAAACTATTCAAGCGATTAATAAAAATAATAAAAAAGAAGCAAAAGAAGCCTTACTTCCTTGGGTAAATC
GAGATGTAGAACCTCTATCTATTTTAGGTTTAGGGAAAGCCAGCGCCGAAACCATTATTTTAGGTTATGCCAGAACGGTT
ATTGGTGTTTTATTCTGGTATGGCATCGCAGGTGGGATTGGTGCTTTCATTTATCGCTTATCTTTAGAGTTAGCCAGAGC
TTGGTCTCCATCAAGAGATTCATTTCGTCCATTTGGGATCCCCGCTTTAACCATTCAAGCGTTCCTTGATTTTATTCCTT
TAAAACTTTTTAGCTTATTATGTCTTTTAGGTGAAAAATGCGGATTAACCCTTCAACGCCTCAAACAACAACAAAAAAGT
TGGGCAAATAAAAATAACGCTTGGTTATTAATTATCATTGGCAGTAAATTTGAATTATCTATGGGAGGACCCGTAATTTA
TCAAGGAAAGAAAATAAGTCGTCCAAAGCTAGGAGGGAAAATTGTACCTTCTGCGATTCATTTAGCTCAAATCCATCGTT
TTTTAAGCTGGAGAATCGCCATTTGGATAATTCTTCAAAGCGTCATCATGGTTATGCTTAAACAAGGGCTATAA

Upstream 100 bases:

>100_bases
AAATGGTGATGAAGATGGTTACTTTATTAAAGTAATAACATAATAATGGAGTTAACGATTAGTTTGCTCCATTGTCCCTC
TATATATAGTTAATACATAT

Downstream 100 bases:

>100_bases
CCTTACTTCAACAACATCATGCAGTAAGTCATAGAGGACAAGATGTTAATCTATACAATTGATATGTTCGGTACCGCCAT
TTTTGCAATTTCAGGAGTGT

Product: adenosylcobinamide-phosphate synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MLDKLSFFIADYSLLVLWGALLFHLFLPIPVHAHPMTIWRKFAELLSTKVNTARSYQQRFISGALAWCLMIIPSFIVCIA
ALPIVWNLPLFNLGLLLISLEWRGVEKLCKETIQAINKNNKKEAKEALLPWVNRDVEPLSILGLGKASAETIILGYARTV
IGVLFWYGIAGGIGAFIYRLSLELARAWSPSRDSFRPFGIPALTIQAFLDFIPLKLFSLLCLLGEKCGLTLQRLKQQQKS
WANKNNAWLLIIIGSKFELSMGGPVIYQGKKISRPKLGGKIVPSAIHLAQIHRFLSWRIAIWIILQSVIMVMLKQGL

Sequences:

>Translated_317_residues
MLDKLSFFIADYSLLVLWGALLFHLFLPIPVHAHPMTIWRKFAELLSTKVNTARSYQQRFISGALAWCLMIIPSFIVCIA
ALPIVWNLPLFNLGLLLISLEWRGVEKLCKETIQAINKNNKKEAKEALLPWVNRDVEPLSILGLGKASAETIILGYARTV
IGVLFWYGIAGGIGAFIYRLSLELARAWSPSRDSFRPFGIPALTIQAFLDFIPLKLFSLLCLLGEKCGLTLQRLKQQQKS
WANKNNAWLLIIIGSKFELSMGGPVIYQGKKISRPKLGGKIVPSAIHLAQIHRFLSWRIAIWIILQSVIMVMLKQGL
>Mature_317_residues
MLDKLSFFIADYSLLVLWGALLFHLFLPIPVHAHPMTIWRKFAELLSTKVNTARSYQQRFISGALAWCLMIIPSFIVCIA
ALPIVWNLPLFNLGLLLISLEWRGVEKLCKETIQAINKNNKKEAKEALLPWVNRDVEPLSILGLGKASAETIILGYARTV
IGVLFWYGIAGGIGAFIYRLSLELARAWSPSRDSFRPFGIPALTIQAFLDFIPLKLFSLLCLLGEKCGLTLQRLKQQQKS
WANKNNAWLLIIIGSKFELSMGGPVIYQGKKISRPKLGGKIVPSAIHLAQIHRFLSWRIAIWIILQSVIMVMLKQGL

Specific function: Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group [H]

COG id: COG1270

COG function: function code H; Cobalamin biosynthesis protein CobD/CbiB

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CobD/CbiB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004485 [H]

Pfam domain/function: PF03186 CobD_Cbib [H]

EC number: NA

Molecular weight: Translated: 35705; Mature: 35705

Theoretical pI: Translated: 10.61; Mature: 10.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA