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The map label for this gene is rraA [C]

Identifier: 209695975

GI number: 209695975

Start: 2739226

End: 2739702

Strand: Reverse

Name: rraA [C]

Synonym: VSAL_I2557

Alternate gene names: 209695975

Gene position: 2739702-2739226 (Counterclockwise)

Preceding gene: 209695977

Following gene: 209695974

Centisome position: 82.39

GC content: 40.25

Gene sequence:

>477_bases
ATGGATTTATTGCCTGATATTTGTGATCAATTTGAAGACCGCGTTCAACTTATTGATGTCGAATTTAAAGATTTTGGTGG
TCGAGCGTGTTTTTACGGTGAGATTGTCACTGTACGTTGCTATCAAGATAATTCACTTGTGCGTGAAGTATTGCAGCAAA
ATGGTAAGGGGAAAGTGCTCTTTATTGATGGCAATGGCTCGTGCCAAAAAGCACTTCTTGGCGATCAAGTTGCACTACTT
GCTGTAAATAATCAGTGGGAAGGTGTGATCGTATATGGGGCTATTCGTGATGTCGGTGAAATAAGAACAATGCCACTAGG
AGTCAAGGCATTGGGCACATCACCATTTAAAACAGAAAAACGAGGCGCTGGAGAGCAACAAGTGTCAATTACGGTTAATA
CTCAAGTTATCCCACCTGGGGATTATATCTACGCAGATCTCAATGGTGTCTTGATAAGCAAAGAATTATTAATTTAA

Upstream 100 bases:

>100_bases
TATTTATAGTAAAATTGTAAATTTCTATGCGATTTATGGAGATGTAATACTTGCTAATGTTGTTAAGCAGGTTTGTTTTA
ATAAACAAGGAGAATATAAA

Downstream 100 bases:

>100_bases
TTGCAAAAACTAAATGCTTGTTTAATAGATTATATTCAATAGCTTGCAACGATATATTCTTCTTTTGTTATGTAAATGAG
TAAATTTATCATTGACTTGT

Product: ribonuclease activity regulator protein RraA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MDLLPDICDQFEDRVQLIDVEFKDFGGRACFYGEIVTVRCYQDNSLVREVLQQNGKGKVLFIDGNGSCQKALLGDQVALL
AVNNQWEGVIVYGAIRDVGEIRTMPLGVKALGTSPFKTEKRGAGEQQVSITVNTQVIPPGDYIYADLNGVLISKELLI

Sequences:

>Translated_158_residues
MDLLPDICDQFEDRVQLIDVEFKDFGGRACFYGEIVTVRCYQDNSLVREVLQQNGKGKVLFIDGNGSCQKALLGDQVALL
AVNNQWEGVIVYGAIRDVGEIRTMPLGVKALGTSPFKTEKRGAGEQQVSITVNTQVIPPGDYIYADLNGVLISKELLI
>Mature_158_residues
MDLLPDICDQFEDRVQLIDVEFKDFGGRACFYGEIVTVRCYQDNSLVREVLQQNGKGKVLFIDGNGSCQKALLGDQVALL
AVNNQWEGVIVYGAIRDVGEIRTMPLGVKALGTSPFKTEKRGAGEQQVSITVNTQVIPPGDYIYADLNGVLISKELLI

Specific function: Regulator Of Rnase E/Rne, Which Inhibits The Endonuclease Activity And Thereby Leads To Increase The Half-Life And Abundance Of Rnas. General Modulator Of RNA Abundance. Does Not Have Any Methyltransferase Activity. [C]

COG id: COG0684

COG function: function code H; Demethylmenaquinone methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraA family [H]

Homologues:

Organism=Escherichia coli, GI1790364, Length=153, Percent_Identity=38.562091503268, Blast_Score=138, Evalue=1e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005493
- InterPro:   IPR010203 [H]

Pfam domain/function: PF03737 Methyltransf_6 [H]

EC number: NA

Molecular weight: Translated: 17368; Mature: 17368

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLLPDICDQFEDRVQLIDVEFKDFGGRACFYGEIVTVRCYQDNSLVREVLQQNGKGKVL
CCCCHHHHHHHHCCEEEEEEEECCCCCEEEEEEEEEEEEEECCCHHHHHHHHCCCCEEEE
FIDGNGSCQKALLGDQVALLAVNNQWEGVIVYGAIRDVGEIRTMPLGVKALGTSPFKTEK
EEECCCCCCCHHCCCEEEEEEECCCCCEEEEEECCCCCCCEECCCCCEEECCCCCCCCCC
RGAGEQQVSITVNTQVIPPGDYIYADLNGVLISKELLI
CCCCCEEEEEEEEEEEECCCCEEEEECCCEEEEEEECC
>Mature Secondary Structure
MDLLPDICDQFEDRVQLIDVEFKDFGGRACFYGEIVTVRCYQDNSLVREVLQQNGKGKVL
CCCCHHHHHHHHCCEEEEEEEECCCCCEEEEEEEEEEEEEECCCHHHHHHHHCCCCEEEE
FIDGNGSCQKALLGDQVALLAVNNQWEGVIVYGAIRDVGEIRTMPLGVKALGTSPFKTEK
EEECCCCCCCHHCCCEEEEEEECCCCCEEEEEECCCCCCCEECCCCCEEECCCCCCCCCC
RGAGEQQVSITVNTQVIPPGDYIYADLNGVLISKELLI
CCCCCEEEEEEEEEEEECCCCEEEEECCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA