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The map label for this gene is ynjC [H]

Identifier: 209695921

GI number: 209695921

Start: 2683155

End: 2684855

Strand: Direct

Name: ynjC [H]

Synonym: VSAL_I2503

Alternate gene names: 209695921

Gene position: 2683155-2684855 (Clockwise)

Preceding gene: 209695920

Following gene: 209695922

Centisome position: 80.69

GC content: 40.86

Gene sequence:

>1701_bases
ATGATATTACACGTTTTCTATGCTTTTCTTGTTGTGATCTGCATTGTCCCTATTGCTCCCGGTCTAATTGGTGTATTAAG
CTCATCATTGAGTTATATCCCCTCCATTAGATTAACTCAGTTTACTCTGAATGGCTATCATGCGGCTTTTGAGTGGAGTG
GCGTTTGGCATTCCATTTTATTAACGCTATCCAGTGCAATCATCAGTACCTTCTTTACTTGCATTATCTCCTTTGCCATT
TTGCAAAGTGGTTGGCATCGTCCTATTTGGAAAAAAATAGAACCACTTCTAGCCCCTTTACTTGCGATGCCCCATGTTGC
TTTCGCTATTGGGTTCGCCTTTCTTTTCTCTCCAACCGGAATGATTGCCAGACTCATTGCTCCCATAACTAATGAACCTT
TATTTTCAATCATTAATGACCCGTTCAATATCGGTCTAATCTTAGTGCTCATCATTAAAGAAGTGCCTTTTTTGTTACTC
ATGAGCATTCCGATAATGCAGCAGCTCAATATTGATAAAACAATAAAAGTAACGACCAGTTTAGGCTATAAGCCTCATCA
AATGTGGTGGAAGTGCCTTTTTCCTCAATGGCTAAAAAAAGCGCGCTTCCCTTTATTGGCGATCATTGCTTACAGCGTTT
CAGTGGTTGATGTGGGTTTAATTATTGGATCCAGTAATCCCCCAACCTTTGCTGTTTTAGTTTGGCAATGGTTTAGTGAT
CCAGACATTAACCTTCAGCCTAGAGCGGGCGCAGGGGCTGTTATCCTATTTATCCTGTGTTTACTGCTAATTGCCATTCA
CCGCTTTATCGAATGGGGAATAACAAGCTATTGCCGAGCATGGCAAATCTCTGGCCGATTTGGATTTTTATTTCCAGGGC
TTTCTTTATTTGGGATGGTTAGTAGCATTATTGTTATCTCTTTTCCTATTATGTGGGTATGGAGCATCACACAGCGGTGG
CGATTTCCTAATTTAACGCCTACTCAGTTCTCTCTACGGTTCTGGATTGAAGAATGGCCGAATATTGTCCCTACCATTGC
TGACAGCCTTTTTATTGCTCTTATTTCAGCAAGTATCGCGCTTGTATTGGCATTAATTGGGCATGAATATAGACTTAAAT
ATCGTTGGCATATCCCGCCCCTACTGATAGCGATACCGATGTTAGTACCCCAACTTTCTCTTTTGTTTGGTATTCAAGTT
GCCGCACTCTATTTCTCTCATGATTCTTATTATATTTGGGTGATTTGGTCACACATATTTTTCTCTTTCCCTTATATTTT
TCTTGCACTAGATGGCCCTTGGCGTAGTTTTGATCAACGCTTAATTCAAACTGGGTTAAGCTTAGGTAAATCACCATTGC
ATTGTTGGTTCACGATTAAAGCCCCCTTACTTTTTCCTGCCATTATTTATGCGGGAGCAATAGGGATCAGTGTCAGTTTG
GCTCAATATTTACCAACAAAGATGTTAGGAGCAGGAAGAGTGATGACGCTAACGACGGAGGCTGTGGCATTATCCAGTGG
ATTTGATCGTCGAATTACGGCACTTTATGCACTTTGGCAAGCGCTGTTGCCTTTTGTTTTCTTTACGTTAGCCGTCGTTA
TCGGTCGATATTATTCTCGTCATTCCCACATCAATATTAAGACAAGGAAGGTTGAAGGTCATGAGCCTATCAATAAAGAA
TCTCACCATTTTCACTCATAG

Upstream 100 bases:

>100_bases
TAAATGGATAGGGGTAATTTAATCAAATGATTCATTTTATAACTGGAACTTGTTGCTCCAATACTGGTCTATAATTTTTT
AGGATCTAAATAACAAGATT

Downstream 100 bases:

>100_bases
TGGGACTGAGTTATTGTCCTCTTGCTCTTTATCTGTAAATAAAGGGGAAGTACTGAGTATTATGGGGCCAAGTGGCTGTG
GAAAATCAACACTATTAAAC

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 566; Mature: 566

Protein sequence:

>566_residues
MILHVFYAFLVVICIVPIAPGLIGVLSSSLSYIPSIRLTQFTLNGYHAAFEWSGVWHSILLTLSSAIISTFFTCIISFAI
LQSGWHRPIWKKIEPLLAPLLAMPHVAFAIGFAFLFSPTGMIARLIAPITNEPLFSIINDPFNIGLILVLIIKEVPFLLL
MSIPIMQQLNIDKTIKVTTSLGYKPHQMWWKCLFPQWLKKARFPLLAIIAYSVSVVDVGLIIGSSNPPTFAVLVWQWFSD
PDINLQPRAGAGAVILFILCLLLIAIHRFIEWGITSYCRAWQISGRFGFLFPGLSLFGMVSSIIVISFPIMWVWSITQRW
RFPNLTPTQFSLRFWIEEWPNIVPTIADSLFIALISASIALVLALIGHEYRLKYRWHIPPLLIAIPMLVPQLSLLFGIQV
AALYFSHDSYYIWVIWSHIFFSFPYIFLALDGPWRSFDQRLIQTGLSLGKSPLHCWFTIKAPLLFPAIIYAGAIGISVSL
AQYLPTKMLGAGRVMTLTTEAVALSSGFDRRITALYALWQALLPFVFFTLAVVIGRYYSRHSHINIKTRKVEGHEPINKE
SHHFHS

Sequences:

>Translated_566_residues
MILHVFYAFLVVICIVPIAPGLIGVLSSSLSYIPSIRLTQFTLNGYHAAFEWSGVWHSILLTLSSAIISTFFTCIISFAI
LQSGWHRPIWKKIEPLLAPLLAMPHVAFAIGFAFLFSPTGMIARLIAPITNEPLFSIINDPFNIGLILVLIIKEVPFLLL
MSIPIMQQLNIDKTIKVTTSLGYKPHQMWWKCLFPQWLKKARFPLLAIIAYSVSVVDVGLIIGSSNPPTFAVLVWQWFSD
PDINLQPRAGAGAVILFILCLLLIAIHRFIEWGITSYCRAWQISGRFGFLFPGLSLFGMVSSIIVISFPIMWVWSITQRW
RFPNLTPTQFSLRFWIEEWPNIVPTIADSLFIALISASIALVLALIGHEYRLKYRWHIPPLLIAIPMLVPQLSLLFGIQV
AALYFSHDSYYIWVIWSHIFFSFPYIFLALDGPWRSFDQRLIQTGLSLGKSPLHCWFTIKAPLLFPAIIYAGAIGISVSL
AQYLPTKMLGAGRVMTLTTEAVALSSGFDRRITALYALWQALLPFVFFTLAVVIGRYYSRHSHINIKTRKVEGHEPINKE
SHHFHS
>Mature_566_residues
MILHVFYAFLVVICIVPIAPGLIGVLSSSLSYIPSIRLTQFTLNGYHAAFEWSGVWHSILLTLSSAIISTFFTCIISFAI
LQSGWHRPIWKKIEPLLAPLLAMPHVAFAIGFAFLFSPTGMIARLIAPITNEPLFSIINDPFNIGLILVLIIKEVPFLLL
MSIPIMQQLNIDKTIKVTTSLGYKPHQMWWKCLFPQWLKKARFPLLAIIAYSVSVVDVGLIIGSSNPPTFAVLVWQWFSD
PDINLQPRAGAGAVILFILCLLLIAIHRFIEWGITSYCRAWQISGRFGFLFPGLSLFGMVSSIIVISFPIMWVWSITQRW
RFPNLTPTQFSLRFWIEEWPNIVPTIADSLFIALISASIALVLALIGHEYRLKYRWHIPPLLIAIPMLVPQLSLLFGIQV
AALYFSHDSYYIWVIWSHIFFSFPYIFLALDGPWRSFDQRLIQTGLSLGKSPLHCWFTIKAPLLFPAIIYAGAIGISVSL
AQYLPTKMLGAGRVMTLTTEAVALSSGFDRRITALYALWQALLPFVFFTLAVVIGRYYSRHSHINIKTRKVEGHEPINKE
SHHFHS

Specific function: Probably part of the binding-protein-dependent transport system ynjCD. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4135

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transmembrane type-1 domains [H]

Homologues:

Organism=Escherichia coli, GI145693149, Length=143, Percent_Identity=41.2587412587413, Blast_Score=107, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 64072; Mature: 64072

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILHVFYAFLVVICIVPIAPGLIGVLSSSLSYIPSIRLTQFTLNGYHAAFEWSGVWHSIL
CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEECCEEEEEEEHHHHHHHH
LTLSSAIISTFFTCIISFAILQSGWHRPIWKKIEPLLAPLLAMPHVAFAIGFAFLFSPTG
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
MIARLIAPITNEPLFSIINDPFNIGLILVLIIKEVPFLLLMSIPIMQQLNIDKTIKVTTS
HHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
LGYKPHQMWWKCLFPQWLKKARFPLLAIIAYSVSVVDVGLIIGSSNPPTFAVLVWQWFSD
CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEEEEEECCCCCEEEEEEEEECCC
PDINLQPRAGAGAVILFILCLLLIAIHRFIEWGITSYCRAWQISGRFGFLFPGLSLFGMV
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEHHCCHHHHHHH
SSIIVISFPIMWVWSITQRWRFPNLTPTQFSLRFWIEEWPNIVPTIADSLFIALISASIA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHEEHHHHCCCHHHHHHHHHHHHHHHHHHH
LVLALIGHEYRLKYRWHIPPLLIAIPMLVPQLSLLFGIQVAALYFSHDSYYIWVIWSHIF
HHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEHHHHHHH
FSFPYIFLALDGPWRSFDQRLIQTGLSLGKSPLHCWFTIKAPLLFPAIIYAGAIGISVSL
HHCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHH
AQYLPTKMLGAGRVMTLTTEAVALSSGFDRRITALYALWQALLPFVFFTLAVVIGRYYSR
HHHCCHHHHCCCCEEEEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
HSHINIKTRKVEGHEPINKESHHFHS
CCEEEEEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MILHVFYAFLVVICIVPIAPGLIGVLSSSLSYIPSIRLTQFTLNGYHAAFEWSGVWHSIL
CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEECCEEEEEEEHHHHHHHH
LTLSSAIISTFFTCIISFAILQSGWHRPIWKKIEPLLAPLLAMPHVAFAIGFAFLFSPTG
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
MIARLIAPITNEPLFSIINDPFNIGLILVLIIKEVPFLLLMSIPIMQQLNIDKTIKVTTS
HHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
LGYKPHQMWWKCLFPQWLKKARFPLLAIIAYSVSVVDVGLIIGSSNPPTFAVLVWQWFSD
CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEEEEEECCCCCEEEEEEEEECCC
PDINLQPRAGAGAVILFILCLLLIAIHRFIEWGITSYCRAWQISGRFGFLFPGLSLFGMV
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEHHCCHHHHHHH
SSIIVISFPIMWVWSITQRWRFPNLTPTQFSLRFWIEEWPNIVPTIADSLFIALISASIA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHEEHHHHCCCHHHHHHHHHHHHHHHHHHH
LVLALIGHEYRLKYRWHIPPLLIAIPMLVPQLSLLFGIQVAALYFSHDSYYIWVIWSHIF
HHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEHHHHHHH
FSFPYIFLALDGPWRSFDQRLIQTGLSLGKSPLHCWFTIKAPLLFPAIIYAGAIGISVSL
HHCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHH
AQYLPTKMLGAGRVMTLTTEAVALSSGFDRRITALYALWQALLPFVFFTLAVVIGRYYSR
HHHCCHHHHCCCCEEEEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
HSHINIKTRKVEGHEPINKESHHFHS
CCEEEEEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]