| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is glnD [H]
Identifier: 209695853
GI number: 209695853
Start: 2599448
End: 2602099
Strand: Direct
Name: glnD [H]
Synonym: VSAL_I2429
Alternate gene names: 209695853
Gene position: 2599448-2602099 (Clockwise)
Preceding gene: 209695852
Following gene: 209695854
Centisome position: 78.18
GC content: 40.01
Gene sequence:
>2652_bases ATGCGATTGTCAATATCAGCAGGGATTGCTATGAATCACATCTCTCCTCTTTTATTTAATAACGAAGACATCTCCCTCAT TGAGTTAAAACAACAATTACGTTTTTTCTCAGATTATCAAATTCATAAATTTCATCAACATACTCCAGTGTCAGAGTTAG TACTCCAACGAGCTCAATATTTTGATCAATTACTTACTCGTCTCTGGCTATTTTTTGAATTCGATTCCCAGCCAGAAGTA TCACTCATTGCTGTTGGCGGTTATGGGCGTAATGAACTCCACCCTCTTTCTGATATTGATATTTTAATTTTAACAAACCC CCATATTGATGAGACATTTCAGCGTAAAGTCAGTGATTTCGTCACCTTACTTTGGGATTTAAAACTTGAAGTAGGACACA GCGTTCGTAATTTAGCGGAATGCATTGCCATCGGAAAAGACGATTTAACTGTCGCAACAAATTTACAAGAAGCCCGCTAT ATTTGTGGGGATGAAGAATACGCACATAAACTTAAATTAAATATTCATTCCGATAGCTTTTGGCCGAGTGAATCTTTTTA TCAAGCAAAAATAAATGAACAAAAAAGACGTCACTCTCGCTATCACGATACAACCTACAACCTAGAACCCGATATCAAAT CAAGCCCTGGTGGACTGCGTGATATTCATACTTTAAGTTGGATCGCTCGACGTCATTTTGGAGCCACCTCACTGCTAGAA ATGAGCCAAGCTGGCTTTCTAACAGATGCAGAGTATAGAGAATTAGTTGAATGCCAAGAGTTCTTATGGCGAATTCGATT TGCGCTCCATATCGAGTTAAAACGCTACGACAATCGCCTCACATTTGGACATCAGCCTCAAGTTGCTGAGCATTTAGGAT TTCTAGGTGAGGGAAATCGCGGTGTAGAGCGAATGATGAAAGAATTTTATCGAACACTACGCCGTGTCGCTGAACTCAAT AGCATGCTGTTGAAGATTTTTGATCAAGCAATTATCAATCAGGGCGAGCAAGAGAAAGCCATTATTATTAATGATGATTT TCAACGTCGTGGTCGTTTAATCGAAGCAAGAAAACCCGCCTTATTTCAAGCAAGACCCGATACCATCTTAGATATGTTTT TGCTCATAGCAAATGACTCTACGATTGAAGGGGTTTCACCACCAACAATGCGTCAATTGCGCACTGCTCGCCGTCGATTA AATCGTTTTTTATGTGAAATCCCCGAAGCAAGAAATAAGTTTATGACGCTAACTCAACACCCTAACGCGCTTCATAATGC CTTTAGTGTCATGCATCGATTAGGCGTACTTTCTGCTTACTTGCCGCAATGGATCCAGATTGTAGGTCAAATGCAGTTTG ACCTTTTTCATGCTTATACTGTGGACGAACACAGCATTCGATTATTAAAACACATCAATAAATTTTCGGATCCTGAAAAT AGAGAAAAGCACCCTATTTGTTGTGAGGTTTACCCTAAGATCAATAAAAAAGAGTTATTACTTATTGCTGCAATTTTCCA TGATATAGCGAAAGGCCGCGGTGGTGATCACTCTAAATTAGGATCCGTTGATGCTTATGATTTTTGTATTGAACATGGTT TATCAAAGCCAGAAGCCAATCTTGTCTCTTGGTTAGTAAAAAGCCACTTACTCATGTCAGTAACGGCACAACGAAGAGAT ATTTATGATCCTGATGTCATTACTGAATTCGCACAACAAGTTCGTGATGAAGAACGACTCGATTATTTAGTCTGCTTAAC CGTTGCTGACATTTGTGCAACCAACCCTGACTTATGGAATGGCTGGAAACGCTCTCTCATTGCCGATTTGTACAATGCCA CCCAACGAGCATTACGTCGTGGTTTAGAGAACCCACCCGACCTTCGAGATCGTATACGTCATAATCAACATCTTGCCTCA GCACAATTACGAAGTGATGGATTTAATCAGGGCGAGATAGATCGCCTATGGCGTCGCTTTAAAGCCGATTATTTTTTAAG ACACACTCAACAACAAATTGCTTGGCATACCAGTAATCTTTTGCAGCATAACGACATAGAAAAATCACTCATTCTGATTA GTAAAAATGCGACAAGAGGCGGGACTGAAATTTTCGTGTACAGTAAAGATCAAGCTCATCTTTTTGCTACCGTCGCCGCT GAACTCGATCGACGAAGTATTACGATTTATGATGCTCAAATCATGTCGAGTAAAGATGGGTACGCGCTTGATACTTTTAT TGTACTTGACCAAAATGATGACCCGATTGATGAAGAGCGACAACAGCTATTAATTGATCAACTTTATGCTGTAGAGCTCG AAACTCAAGATACGCATATAAGAACTCGCCGTCCACCACGTCAATTGCAACATTTTACCGTAAAAACTCGCATGGAGTTC CTTCCAACAAAAACAGGGAAACGAACGTTAATGGAGTTTGTCGCTTTAGATACTCCGGGGTTACTCGCCACTGTCGGGGC TACTTTTGCACGCTTAGGTGTTAACCTCCATGCAGCAAAAATAACGACCATTGGAGAAAGAGCAGAAGATTTATTTATTC TAACCTCTGAAACGGGTGGACGACTTGACGATGAAAAACAAGCGGAACTAAAAATAGCGCTAATCAAAAATGTAGATGAA TTGATTAATTAA
Upstream 100 bases:
>100_bases ATTGTGATAGCGTTTTTTCTAATTTACATCGACTCTCGTAATAGAAAAACCAACATAATAATTAAGACTCTACATCTAAG TATAAATAAGTAAGTAATTA
Downstream 100 bases:
>100_bases CCTGAATTCTGGATAAGGCTGAACTAATTGCCCACCTAACGATCAGATCTTTCGACCAAGAATTATTTGAACGTATTTTA AAAGGTGGGCAAGATGAATA
Product: PII uridylyl-transferase
Products: NA
Alternate protein names: PII uridylyl-transferase; UTase; Uridylyl-removing enzyme [H]
Number of amino acids: Translated: 883; Mature: 883
Protein sequence:
>883_residues MRLSISAGIAMNHISPLLFNNEDISLIELKQQLRFFSDYQIHKFHQHTPVSELVLQRAQYFDQLLTRLWLFFEFDSQPEV SLIAVGGYGRNELHPLSDIDILILTNPHIDETFQRKVSDFVTLLWDLKLEVGHSVRNLAECIAIGKDDLTVATNLQEARY ICGDEEYAHKLKLNIHSDSFWPSESFYQAKINEQKRRHSRYHDTTYNLEPDIKSSPGGLRDIHTLSWIARRHFGATSLLE MSQAGFLTDAEYRELVECQEFLWRIRFALHIELKRYDNRLTFGHQPQVAEHLGFLGEGNRGVERMMKEFYRTLRRVAELN SMLLKIFDQAIINQGEQEKAIIINDDFQRRGRLIEARKPALFQARPDTILDMFLLIANDSTIEGVSPPTMRQLRTARRRL NRFLCEIPEARNKFMTLTQHPNALHNAFSVMHRLGVLSAYLPQWIQIVGQMQFDLFHAYTVDEHSIRLLKHINKFSDPEN REKHPICCEVYPKINKKELLLIAAIFHDIAKGRGGDHSKLGSVDAYDFCIEHGLSKPEANLVSWLVKSHLLMSVTAQRRD IYDPDVITEFAQQVRDEERLDYLVCLTVADICATNPDLWNGWKRSLIADLYNATQRALRRGLENPPDLRDRIRHNQHLAS AQLRSDGFNQGEIDRLWRRFKADYFLRHTQQQIAWHTSNLLQHNDIEKSLILISKNATRGGTEIFVYSKDQAHLFATVAA ELDRRSITIYDAQIMSSKDGYALDTFIVLDQNDDPIDEERQQLLIDQLYAVELETQDTHIRTRRPPRQLQHFTVKTRMEF LPTKTGKRTLMEFVALDTPGLLATVGATFARLGVNLHAAKITTIGERAEDLFILTSETGGRLDDEKQAELKIALIKNVDE LIN
Sequences:
>Translated_883_residues MRLSISAGIAMNHISPLLFNNEDISLIELKQQLRFFSDYQIHKFHQHTPVSELVLQRAQYFDQLLTRLWLFFEFDSQPEV SLIAVGGYGRNELHPLSDIDILILTNPHIDETFQRKVSDFVTLLWDLKLEVGHSVRNLAECIAIGKDDLTVATNLQEARY ICGDEEYAHKLKLNIHSDSFWPSESFYQAKINEQKRRHSRYHDTTYNLEPDIKSSPGGLRDIHTLSWIARRHFGATSLLE MSQAGFLTDAEYRELVECQEFLWRIRFALHIELKRYDNRLTFGHQPQVAEHLGFLGEGNRGVERMMKEFYRTLRRVAELN SMLLKIFDQAIINQGEQEKAIIINDDFQRRGRLIEARKPALFQARPDTILDMFLLIANDSTIEGVSPPTMRQLRTARRRL NRFLCEIPEARNKFMTLTQHPNALHNAFSVMHRLGVLSAYLPQWIQIVGQMQFDLFHAYTVDEHSIRLLKHINKFSDPEN REKHPICCEVYPKINKKELLLIAAIFHDIAKGRGGDHSKLGSVDAYDFCIEHGLSKPEANLVSWLVKSHLLMSVTAQRRD IYDPDVITEFAQQVRDEERLDYLVCLTVADICATNPDLWNGWKRSLIADLYNATQRALRRGLENPPDLRDRIRHNQHLAS AQLRSDGFNQGEIDRLWRRFKADYFLRHTQQQIAWHTSNLLQHNDIEKSLILISKNATRGGTEIFVYSKDQAHLFATVAA ELDRRSITIYDAQIMSSKDGYALDTFIVLDQNDDPIDEERQQLLIDQLYAVELETQDTHIRTRRPPRQLQHFTVKTRMEF LPTKTGKRTLMEFVALDTPGLLATVGATFARLGVNLHAAKITTIGERAEDLFILTSETGGRLDDEKQAELKIALIKNVDE LIN >Mature_883_residues MRLSISAGIAMNHISPLLFNNEDISLIELKQQLRFFSDYQIHKFHQHTPVSELVLQRAQYFDQLLTRLWLFFEFDSQPEV SLIAVGGYGRNELHPLSDIDILILTNPHIDETFQRKVSDFVTLLWDLKLEVGHSVRNLAECIAIGKDDLTVATNLQEARY ICGDEEYAHKLKLNIHSDSFWPSESFYQAKINEQKRRHSRYHDTTYNLEPDIKSSPGGLRDIHTLSWIARRHFGATSLLE MSQAGFLTDAEYRELVECQEFLWRIRFALHIELKRYDNRLTFGHQPQVAEHLGFLGEGNRGVERMMKEFYRTLRRVAELN SMLLKIFDQAIINQGEQEKAIIINDDFQRRGRLIEARKPALFQARPDTILDMFLLIANDSTIEGVSPPTMRQLRTARRRL NRFLCEIPEARNKFMTLTQHPNALHNAFSVMHRLGVLSAYLPQWIQIVGQMQFDLFHAYTVDEHSIRLLKHINKFSDPEN REKHPICCEVYPKINKKELLLIAAIFHDIAKGRGGDHSKLGSVDAYDFCIEHGLSKPEANLVSWLVKSHLLMSVTAQRRD IYDPDVITEFAQQVRDEERLDYLVCLTVADICATNPDLWNGWKRSLIADLYNATQRALRRGLENPPDLRDRIRHNQHLAS AQLRSDGFNQGEIDRLWRRFKADYFLRHTQQQIAWHTSNLLQHNDIEKSLILISKNATRGGTEIFVYSKDQAHLFATVAA ELDRRSITIYDAQIMSSKDGYALDTFIVLDQNDDPIDEERQQLLIDQLYAVELETQDTHIRTRRPPRQLQHFTVKTRMEF LPTKTGKRTLMEFVALDTPGLLATVGATFARLGVNLHAAKITTIGERAEDLFILTSETGGRLDDEKQAELKIALIKNVDE LIN
Specific function: Modifies, by uridylylation or deuridylylation the PII (glnB) regulatory protein [H]
COG id: COG2844
COG function: function code O; UTP:GlnB (protein PII) uridylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glnD family [H]
Homologues:
Organism=Escherichia coli, GI1786363, Length=856, Percent_Identity=52.803738317757, Blast_Score=935, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR010043 - InterPro: IPR003607 - InterPro: IPR002934 - InterPro: IPR013546 [H]
Pfam domain/function: PF01842 ACT; PF08335 GlnD_UR_UTase; PF01909 NTP_transf_2 [H]
EC number: =2.7.7.59 [H]
Molecular weight: Translated: 102191; Mature: 102191
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLSISAGIAMNHISPLLFNNEDISLIELKQQLRFFSDYQIHKFHQHTPVSELVLQRAQY CEEEEECCCHHHCCCCEEECCCCCHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHH FDQLLTRLWLFFEFDSQPEVSLIAVGGYGRNELHPLSDIDILILTNPHIDETFQRKVSDF HHHHHHHHHEEEEECCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHH VTLLWDLKLEVGHSVRNLAECIAIGKDDLTVATNLQEARYICGDEEYAHKLKLNIHSDSF HHHHHHHHHHHCHHHHHHHHHHHCCCCCCEEECCHHHHHHHCCCHHHCEEEEEEEECCCC WPSESFYQAKINEQKRRHSRYHDTTYNLEPDIKSSPGGLRDIHTLSWIARRHFGATSLLE CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHH MSQAGFLTDAEYRELVECQEFLWRIRFALHIELKRYDNRLTFGHQPQVAEHLGFLGEGNR HHHCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCHHHHCCCCCCCCH GVERMMKEFYRTLRRVAELNSMLLKIFDQAIINQGEQEKAIIINDDFQRRGRLIEARKPA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHCCCEEECCCCC LFQARPDTILDMFLLIANDSTIEGVSPPTMRQLRTARRRLNRFLCEIPEARNKFMTLTQH EECCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHCCEEEEECC PNALHNAFSVMHRLGVLSAYLPQWIQIVGQMQFDLFHAYTVDEHSIRLLKHINKFSDPEN CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHCCCCCC REKHPICCEVYPKINKKELLLIAAIFHDIAKGRGGDHSKLGSVDAYDFCIEHGLSKPEAN CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCHHH LVSWLVKSHLLMSVTAQRRDIYDPDVITEFAQQVRDEERLDYLVCLTVADICATNPDLWN HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH GWKRSLIADLYNATQRALRRGLENPPDLRDRIRHNQHLASAQLRSDGFNQGEIDRLWRRF HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH KADYFLRHTQQQIAWHTSNLLQHNDIEKSLILISKNATRGGTEIFVYSKDQAHLFATVAA HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEECCCHHHHHHHHH ELDRRSITIYDAQIMSSKDGYALDTFIVLDQNDDPIDEERQQLLIDQLYAVELETQDTHI HHCCCEEEEEEHEECCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHEEEECCCCCC RTRRPPRQLQHFTVKTRMEFLPTKTGKRTLMEFVALDTPGLLATVGATFARLGVNLHAAK CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCEEEEEE ITTIGERAEDLFILTSETGGRLDDEKQAELKIALIKNVDELIN EEECCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MRLSISAGIAMNHISPLLFNNEDISLIELKQQLRFFSDYQIHKFHQHTPVSELVLQRAQY CEEEEECCCHHHCCCCEEECCCCCHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHH FDQLLTRLWLFFEFDSQPEVSLIAVGGYGRNELHPLSDIDILILTNPHIDETFQRKVSDF HHHHHHHHHEEEEECCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHH VTLLWDLKLEVGHSVRNLAECIAIGKDDLTVATNLQEARYICGDEEYAHKLKLNIHSDSF HHHHHHHHHHHCHHHHHHHHHHHCCCCCCEEECCHHHHHHHCCCHHHCEEEEEEEECCCC WPSESFYQAKINEQKRRHSRYHDTTYNLEPDIKSSPGGLRDIHTLSWIARRHFGATSLLE CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHH MSQAGFLTDAEYRELVECQEFLWRIRFALHIELKRYDNRLTFGHQPQVAEHLGFLGEGNR HHHCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCHHHHCCCCCCCCH GVERMMKEFYRTLRRVAELNSMLLKIFDQAIINQGEQEKAIIINDDFQRRGRLIEARKPA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHCCCEEECCCCC LFQARPDTILDMFLLIANDSTIEGVSPPTMRQLRTARRRLNRFLCEIPEARNKFMTLTQH EECCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHCCEEEEECC PNALHNAFSVMHRLGVLSAYLPQWIQIVGQMQFDLFHAYTVDEHSIRLLKHINKFSDPEN CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHCCCCCC REKHPICCEVYPKINKKELLLIAAIFHDIAKGRGGDHSKLGSVDAYDFCIEHGLSKPEAN CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCHHH LVSWLVKSHLLMSVTAQRRDIYDPDVITEFAQQVRDEERLDYLVCLTVADICATNPDLWN HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH GWKRSLIADLYNATQRALRRGLENPPDLRDRIRHNQHLASAQLRSDGFNQGEIDRLWRRF HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH KADYFLRHTQQQIAWHTSNLLQHNDIEKSLILISKNATRGGTEIFVYSKDQAHLFATVAA HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEECCCHHHHHHHHH ELDRRSITIYDAQIMSSKDGYALDTFIVLDQNDDPIDEERQQLLIDQLYAVELETQDTHI HHCCCEEEEEEHEECCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHEEEECCCCCC RTRRPPRQLQHFTVKTRMEFLPTKTGKRTLMEFVALDTPGLLATVGATFARLGVNLHAAK CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCEEEEEE ITTIGERAEDLFILTSETGGRLDDEKQAELKIALIKNVDELIN EEECCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA