| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695801
Identifier: 209695801
GI number: 209695801
Start: 2547510
End: 2548178
Strand: Direct
Name: 209695801
Synonym: VSAL_I2376
Alternate gene names: NA
Gene position: 2547510-2548178 (Clockwise)
Preceding gene: 209695800
Following gene: 209695802
Centisome position: 76.61
GC content: 39.16
Gene sequence:
>669_bases ATGACATATACACAGCTCACCGGTCTATCAACTCAACACCTCTCCGTTGTTAACCCCCATCGCCAACTTCACCATGATTG TATTTCTTCATTTAAGGCACTAGAAATTGCGGCAAAAAAAGCGGGATTTACTCTCACTATCGCAAGCAGTTTTCGTGATT TTGAACGTCAATTAATGATTTGGAATAATAAGTTTACAGGTATTCGTCCCATTCTAGGAACTGACAGTAAAGTGCTAGAT ACGAATAAGATGAGTGATATTGAAAAGATTCACGCCATTATGCGTTGGTCTGCATTGCCAGGAGGAAGTCGCCATCATTG GGGGACCGATCTTGATGTCTATGCGAGCAACCATCTTCCTAAAGGGGTCACATTGCAGCTTGAACCTTGGGAGTACGAAA CAGGACATCAAAAAGAATTCAGTCTATGGTTATTTGAAAATGCCCCTAAATATGGTTTTTTCTTCCCTTATAAGCATGAT AAAAAAGGCGTCGCGATTGAACCTTGGCACCTTAGTTACAAAACAACCAGTGATAAATATATGTCACAACTTACACCTGA ACATTTACTTCAAGCATGGCGAAATGTAGAACTGGCAGGAAAAGAGAGTATCATTAAACATATCGATATCTTATTTCATC GTTACATCATGAACATAAATAAGGAATAG
Upstream 100 bases:
>100_bases CTGATATGTATCAAGAAGTCCTAAATAATTTACTCGCTTAGCCACCTTTTAAGTATATGATGAGAGGGTCTTGATCCTCT CGTTTTTTATTAGGTACCTT
Downstream 100 bases:
>100_bases TCATGGAATGGTTAATGAACCCTTGGGTTATTATCGTCATCGTTTTAAGTGTTGTTATTGGGAACCTTGCCGCATTAAAA GCGACGGCAAATATGAAATT
Product: D-alanyl-D-alanine carboxypeptidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 222; Mature: 221
Protein sequence:
>222_residues MTYTQLTGLSTQHLSVVNPHRQLHHDCISSFKALEIAAKKAGFTLTIASSFRDFERQLMIWNNKFTGIRPILGTDSKVLD TNKMSDIEKIHAIMRWSALPGGSRHHWGTDLDVYASNHLPKGVTLQLEPWEYETGHQKEFSLWLFENAPKYGFFFPYKHD KKGVAIEPWHLSYKTTSDKYMSQLTPEHLLQAWRNVELAGKESIIKHIDILFHRYIMNINKE
Sequences:
>Translated_222_residues MTYTQLTGLSTQHLSVVNPHRQLHHDCISSFKALEIAAKKAGFTLTIASSFRDFERQLMIWNNKFTGIRPILGTDSKVLD TNKMSDIEKIHAIMRWSALPGGSRHHWGTDLDVYASNHLPKGVTLQLEPWEYETGHQKEFSLWLFENAPKYGFFFPYKHD KKGVAIEPWHLSYKTTSDKYMSQLTPEHLLQAWRNVELAGKESIIKHIDILFHRYIMNINKE >Mature_221_residues TYTQLTGLSTQHLSVVNPHRQLHHDCISSFKALEIAAKKAGFTLTIASSFRDFERQLMIWNNKFTGIRPILGTDSKVLDT NKMSDIEKIHAIMRWSALPGGSRHHWGTDLDVYASNHLPKGVTLQLEPWEYETGHQKEFSLWLFENAPKYGFFFPYKHDK KGVAIEPWHLSYKTTSDKYMSQLTPEHLLQAWRNVELAGKESIIKHIDILFHRYIMNINKE
Specific function: Unknown
COG id: COG1876
COG function: function code M; D-alanyl-D-alanine carboxypeptidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003709 [H]
Pfam domain/function: PF02557 VanY [H]
EC number: NA
Molecular weight: Translated: 25810; Mature: 25679
Theoretical pI: Translated: 9.22; Mature: 9.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTYTQLTGLSTQHLSVVNPHRQLHHDCISSFKALEIAAKKAGFTLTIASSFRDFERQLMI CCCEEECCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHEEEE WNNKFTGIRPILGTDSKVLDTNKMSDIEKIHAIMRWSALPGGSRHHWGTDLDVYASNHLP ECCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCC KGVTLQLEPWEYETGHQKEFSLWLFENAPKYGFFFPYKHDKKGVAIEPWHLSYKTTSDKY CCCEEEECCCCCCCCCCCEEEEEEEECCCCCCEECCCCCCCCCCEECCEEEEEECCHHHH MSQLTPEHLLQAWRNVELAGKESIIKHIDILFHRYIMNINKE HHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TYTQLTGLSTQHLSVVNPHRQLHHDCISSFKALEIAAKKAGFTLTIASSFRDFERQLMI CCEEECCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHEEEE WNNKFTGIRPILGTDSKVLDTNKMSDIEKIHAIMRWSALPGGSRHHWGTDLDVYASNHLP ECCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCC KGVTLQLEPWEYETGHQKEFSLWLFENAPKYGFFFPYKHDKKGVAIEPWHLSYKTTSDKY CCCEEEECCCCCCCCCCCEEEEEEEECCCCCCEECCCCCCCCCCEECCEEEEEECCHHHH MSQLTPEHLLQAWRNVELAGKESIIKHIDILFHRYIMNINKE HHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]