Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209695801

Identifier: 209695801

GI number: 209695801

Start: 2547510

End: 2548178

Strand: Direct

Name: 209695801

Synonym: VSAL_I2376

Alternate gene names: NA

Gene position: 2547510-2548178 (Clockwise)

Preceding gene: 209695800

Following gene: 209695802

Centisome position: 76.61

GC content: 39.16

Gene sequence:

>669_bases
ATGACATATACACAGCTCACCGGTCTATCAACTCAACACCTCTCCGTTGTTAACCCCCATCGCCAACTTCACCATGATTG
TATTTCTTCATTTAAGGCACTAGAAATTGCGGCAAAAAAAGCGGGATTTACTCTCACTATCGCAAGCAGTTTTCGTGATT
TTGAACGTCAATTAATGATTTGGAATAATAAGTTTACAGGTATTCGTCCCATTCTAGGAACTGACAGTAAAGTGCTAGAT
ACGAATAAGATGAGTGATATTGAAAAGATTCACGCCATTATGCGTTGGTCTGCATTGCCAGGAGGAAGTCGCCATCATTG
GGGGACCGATCTTGATGTCTATGCGAGCAACCATCTTCCTAAAGGGGTCACATTGCAGCTTGAACCTTGGGAGTACGAAA
CAGGACATCAAAAAGAATTCAGTCTATGGTTATTTGAAAATGCCCCTAAATATGGTTTTTTCTTCCCTTATAAGCATGAT
AAAAAAGGCGTCGCGATTGAACCTTGGCACCTTAGTTACAAAACAACCAGTGATAAATATATGTCACAACTTACACCTGA
ACATTTACTTCAAGCATGGCGAAATGTAGAACTGGCAGGAAAAGAGAGTATCATTAAACATATCGATATCTTATTTCATC
GTTACATCATGAACATAAATAAGGAATAG

Upstream 100 bases:

>100_bases
CTGATATGTATCAAGAAGTCCTAAATAATTTACTCGCTTAGCCACCTTTTAAGTATATGATGAGAGGGTCTTGATCCTCT
CGTTTTTTATTAGGTACCTT

Downstream 100 bases:

>100_bases
TCATGGAATGGTTAATGAACCCTTGGGTTATTATCGTCATCGTTTTAAGTGTTGTTATTGGGAACCTTGCCGCATTAAAA
GCGACGGCAAATATGAAATT

Product: D-alanyl-D-alanine carboxypeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 221

Protein sequence:

>222_residues
MTYTQLTGLSTQHLSVVNPHRQLHHDCISSFKALEIAAKKAGFTLTIASSFRDFERQLMIWNNKFTGIRPILGTDSKVLD
TNKMSDIEKIHAIMRWSALPGGSRHHWGTDLDVYASNHLPKGVTLQLEPWEYETGHQKEFSLWLFENAPKYGFFFPYKHD
KKGVAIEPWHLSYKTTSDKYMSQLTPEHLLQAWRNVELAGKESIIKHIDILFHRYIMNINKE

Sequences:

>Translated_222_residues
MTYTQLTGLSTQHLSVVNPHRQLHHDCISSFKALEIAAKKAGFTLTIASSFRDFERQLMIWNNKFTGIRPILGTDSKVLD
TNKMSDIEKIHAIMRWSALPGGSRHHWGTDLDVYASNHLPKGVTLQLEPWEYETGHQKEFSLWLFENAPKYGFFFPYKHD
KKGVAIEPWHLSYKTTSDKYMSQLTPEHLLQAWRNVELAGKESIIKHIDILFHRYIMNINKE
>Mature_221_residues
TYTQLTGLSTQHLSVVNPHRQLHHDCISSFKALEIAAKKAGFTLTIASSFRDFERQLMIWNNKFTGIRPILGTDSKVLDT
NKMSDIEKIHAIMRWSALPGGSRHHWGTDLDVYASNHLPKGVTLQLEPWEYETGHQKEFSLWLFENAPKYGFFFPYKHDK
KGVAIEPWHLSYKTTSDKYMSQLTPEHLLQAWRNVELAGKESIIKHIDILFHRYIMNINKE

Specific function: Unknown

COG id: COG1876

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003709 [H]

Pfam domain/function: PF02557 VanY [H]

EC number: NA

Molecular weight: Translated: 25810; Mature: 25679

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYTQLTGLSTQHLSVVNPHRQLHHDCISSFKALEIAAKKAGFTLTIASSFRDFERQLMI
CCCEEECCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHEEEE
WNNKFTGIRPILGTDSKVLDTNKMSDIEKIHAIMRWSALPGGSRHHWGTDLDVYASNHLP
ECCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCC
KGVTLQLEPWEYETGHQKEFSLWLFENAPKYGFFFPYKHDKKGVAIEPWHLSYKTTSDKY
CCCEEEECCCCCCCCCCCEEEEEEEECCCCCCEECCCCCCCCCCEECCEEEEEECCHHHH
MSQLTPEHLLQAWRNVELAGKESIIKHIDILFHRYIMNINKE
HHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TYTQLTGLSTQHLSVVNPHRQLHHDCISSFKALEIAAKKAGFTLTIASSFRDFERQLMI
CCEEECCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHEEEE
WNNKFTGIRPILGTDSKVLDTNKMSDIEKIHAIMRWSALPGGSRHHWGTDLDVYASNHLP
ECCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCC
KGVTLQLEPWEYETGHQKEFSLWLFENAPKYGFFFPYKHDKKGVAIEPWHLSYKTTSDKY
CCCEEEECCCCCCCCCCCEEEEEEEECCCCCCEECCCCCCCCCCEECCEEEEEECCHHHH
MSQLTPEHLLQAWRNVELAGKESIIKHIDILFHRYIMNINKE
HHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]