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The map label for this gene is yedQ [H]

Identifier: 209695775

GI number: 209695775

Start: 2521547

End: 2522329

Strand: Direct

Name: yedQ [H]

Synonym: VSAL_I2348

Alternate gene names: 209695775

Gene position: 2521547-2522329 (Clockwise)

Preceding gene: 209695774

Following gene: 209695776

Centisome position: 75.83

GC content: 31.8

Gene sequence:

>783_bases
ATGGGAAGATTTGAAGCGGCATTAGAGAGTCATTTATCGTATGAAGTATTACAACAATGGATAAATCATAATAAAGAACA
ACAAGCTTACGAAGCATTGGAGTTACGTAGAAACACCCTTGAAAATCAAATTATTATCCAAAACTCAGAGAACAATAAAA
AACAACAACAAACTGAATTACTAAAAACAAAGCAAAATCGTAATCTACTTTTTTTATGCTTTATCTTTTTATTTTTATTT
ACTCTCTATATGACGTACTCACGAAGAAAACTTCGTTTACTCACAGAGAAAGATACATTAACAACCCTAAATAATAGGGC
TTCTATTTTTAATAAAATTAAGTCGACATTAAAAACACCTCATTCAAAAATGGCCTTAATCATGCTCGACGTTGATAATT
TCAAGCAATTCAATGATGAACATGGACATCCAAATGGTGACTTAGCTTTAAAGCATTTATCAATCGTCCTACAAAAACAC
CTCTCATTCCCTCATGAAATCGGTCGTGTTGGGGGGGAGGAATTTATGATTATCTTAAAAAACCTTTCAAAATTGGAATG
CTCTAGGTTAATAAATAAATTAAGAATTGAACTCGAACAATCAACATTCATGACGTTAGATGTAAAAAGATTAGCGATTA
CGGCAAGCTTTTCTTGGATGTATATTGAAGAATCAATGACGGATATAGACCAAATCTATTTCGTTTTAGATGAAGGATTA
TATCAAGCTAAAGCGAATGGTCGGAATTGTATTGTCGATGCGTTAATTGATCCAATCACTTAA

Upstream 100 bases:

>100_bases
CATTAGAACTGATCAATTTAGCGATTAATAAAGCAAAAAAACAGAAAGTAAAAATTTACTCGTCTCATCCTATTTGCATC
AAGCAAAGGTATTAAAAAGT

Downstream 100 bases:

>100_bases
GATAATGATCTGCATAAATGTAATTCGATGTAATTTCCAACTGAATATTTACAATTTTACATTCATAACTATATTTAAAT
AAGCAATGGATATGCAAAAA

Product: membrane associated GGDEF protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MGRFEAALESHLSYEVLQQWINHNKEQQAYEALELRRNTLENQIIIQNSENNKKQQQTELLKTKQNRNLLFLCFIFLFLF
TLYMTYSRRKLRLLTEKDTLTTLNNRASIFNKIKSTLKTPHSKMALIMLDVDNFKQFNDEHGHPNGDLALKHLSIVLQKH
LSFPHEIGRVGGEEFMIILKNLSKLECSRLINKLRIELEQSTFMTLDVKRLAITASFSWMYIEESMTDIDQIYFVLDEGL
YQAKANGRNCIVDALIDPIT

Sequences:

>Translated_260_residues
MGRFEAALESHLSYEVLQQWINHNKEQQAYEALELRRNTLENQIIIQNSENNKKQQQTELLKTKQNRNLLFLCFIFLFLF
TLYMTYSRRKLRLLTEKDTLTTLNNRASIFNKIKSTLKTPHSKMALIMLDVDNFKQFNDEHGHPNGDLALKHLSIVLQKH
LSFPHEIGRVGGEEFMIILKNLSKLECSRLINKLRIELEQSTFMTLDVKRLAITASFSWMYIEESMTDIDQIYFVLDEGL
YQAKANGRNCIVDALIDPIT
>Mature_259_residues
GRFEAALESHLSYEVLQQWINHNKEQQAYEALELRRNTLENQIIIQNSENNKKQQQTELLKTKQNRNLLFLCFIFLFLFT
LYMTYSRRKLRLLTEKDTLTTLNNRASIFNKIKSTLKTPHSKMALIMLDVDNFKQFNDEHGHPNGDLALKHLSIVLQKHL
SFPHEIGRVGGEEFMIILKNLSKLECSRLINKLRIELEQSTFMTLDVKRLAITASFSWMYIEESMTDIDQIYFVLDEGLY
QAKANGRNCIVDALIDPIT

Specific function: Involves in the regulation of cellulose production [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87082007, Length=195, Percent_Identity=31.2820512820513, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1787262, Length=192, Percent_Identity=31.25, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI1787541, Length=187, Percent_Identity=29.4117647058824, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI145693134, Length=180, Percent_Identity=27.7777777777778, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788381, Length=172, Percent_Identity=28.4883720930233, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787802, Length=168, Percent_Identity=26.7857142857143, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI87081977, Length=150, Percent_Identity=30, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1786584, Length=188, Percent_Identity=27.1276595744681, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787816, Length=178, Percent_Identity=30.3370786516854, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI87081881, Length=161, Percent_Identity=27.9503105590062, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 30446; Mature: 30315

Theoretical pI: Translated: 8.10; Mature: 8.10

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRFEAALESHLSYEVLQQWINHNKEQQAYEALELRRNTLENQIIIQNSENNKKQQQTEL
CCHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHH
LKTKQNRNLLFLCFIFLFLFTLYMTYSRRKLRLLTEKDTLTTLNNRASIFNKIKSTLKTP
HHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHEEEECCCHHHHHHHHHHHHHHHHHHHHCC
HSKMALIMLDVDNFKQFNDEHGHPNGDLALKHLSIVLQKHLSFPHEIGRVGGEEFMIILK
CCCEEEEEEECHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHH
NLSKLECSRLINKLRIELEQSTFMTLDVKRLAITASFSWMYIEESMTDIDQIYFVLDEGL
HHHHHHHHHHHHHHHHHHHCCEEEEEEHHHEEEEECCEEEEEHHHHHHHHHHHHHHHHHH
YQAKANGRNCIVDALIDPIT
HHHCCCCCCEEHHHHCCCCC
>Mature Secondary Structure 
GRFEAALESHLSYEVLQQWINHNKEQQAYEALELRRNTLENQIIIQNSENNKKQQQTEL
CHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHH
LKTKQNRNLLFLCFIFLFLFTLYMTYSRRKLRLLTEKDTLTTLNNRASIFNKIKSTLKTP
HHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHEEEECCCHHHHHHHHHHHHHHHHHHHHCC
HSKMALIMLDVDNFKQFNDEHGHPNGDLALKHLSIVLQKHLSFPHEIGRVGGEEFMIILK
CCCEEEEEEECHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHH
NLSKLECSRLINKLRIELEQSTFMTLDVKRLAITASFSWMYIEESMTDIDQIYFVLDEGL
HHHHHHHHHHHHHHHHHHHCCEEEEEEHHHEEEEECCEEEEEHHHHHHHHHHHHHHHHHH
YQAKANGRNCIVDALIDPIT
HHHCCCCCCEEHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]