Click here to switch to the map view.

The map label for this gene is flgD [H]

Identifier: 209695763

GI number: 209695763

Start: 2511930

End: 2512640

Strand: Reverse

Name: flgD [H]

Synonym: VSAL_I2336

Alternate gene names: 209695763

Gene position: 2512640-2511930 (Counterclockwise)

Preceding gene: 209695764

Following gene: 209695762

Centisome position: 75.56

GC content: 42.48

Gene sequence:

>711_bases
ATGACTGGAATCAATAACGTTGGTCAACAAGGCTTGTCCTACATCGACCAGCTTAAAAGTCTTCAAGAGGCGAACAAGCC
TGAAAAGACAACTGGCGGTAAAAATGAACTGAAGCAAGAAGACTTCCTTGCATTATTAACCAAACAGTTGTCTCAACAAG
ACCCATCTAAGCCGGTTGAAAACGATCAAATGATTGCGCAAATGGCATCATTTGCAACCGTTGATGGTATTGGCAAGATG
AATAAGCAGTTCGATAGCTTAAATACATCAATGACATCTAACCAAGCATTACAAGCGTCTTCGCTTGTTGGTCGTGATGT
GCTAGTACCAGGTGCTAAAGGCTTAAAAGAAGCTGATAAAGGTATGGCGGCAATGGTTAAATTGCCTAAAGCGATTAATA
GCTTATTGGTTCGTGTTGAAAACGAACAAGGCCAATTAATTCGTACCTTAAATGTAGGCGCTAAACCAGCCGGAGACTCA
CGTGTTGAGTGGGACGGTAAAGATGATAAAGGCAATGCAATGCCTGCTGGCCGCTACAGCATTAAAGCGGCTGGTGTGCT
AGATGGAGAAAACAAAGAATTTGGTGTATCAACATACGCTAACGTCAACAGTGTTCTTCTAGGCAAAGGCAATGGCAATG
TTTTGCTTAATCTTGCTGGTTTTGCTTCACCGATGAAATTAGCCGAAGTGCTAGAGATCGGCAAAGCATAA

Upstream 100 bases:

>100_bases
TGCTTCTCGTTCATACCAAACGAATGTGCAAGTTGCAGATGCAGGCAAACAAATGTTGCAGAGTACTCTGCGAATGGGTC
AATAAGGATAGGAGGTAGCT

Downstream 100 bases:

>100_bases
AATGGCGAATATTCAGTGCAGCATTAATTGCTGCCTGAATACTCGTATTTATTGTTAAAAATTATTAAACCATAGAGCTA
TGCCAATTCCTTTAACATTC

Product: flagellar basal body rod modification protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MTGINNVGQQGLSYIDQLKSLQEANKPEKTTGGKNELKQEDFLALLTKQLSQQDPSKPVENDQMIAQMASFATVDGIGKM
NKQFDSLNTSMTSNQALQASSLVGRDVLVPGAKGLKEADKGMAAMVKLPKAINSLLVRVENEQGQLIRTLNVGAKPAGDS
RVEWDGKDDKGNAMPAGRYSIKAAGVLDGENKEFGVSTYANVNSVLLGKGNGNVLLNLAGFASPMKLAEVLEIGKA

Sequences:

>Translated_236_residues
MTGINNVGQQGLSYIDQLKSLQEANKPEKTTGGKNELKQEDFLALLTKQLSQQDPSKPVENDQMIAQMASFATVDGIGKM
NKQFDSLNTSMTSNQALQASSLVGRDVLVPGAKGLKEADKGMAAMVKLPKAINSLLVRVENEQGQLIRTLNVGAKPAGDS
RVEWDGKDDKGNAMPAGRYSIKAAGVLDGENKEFGVSTYANVNSVLLGKGNGNVLLNLAGFASPMKLAEVLEIGKA
>Mature_235_residues
TGINNVGQQGLSYIDQLKSLQEANKPEKTTGGKNELKQEDFLALLTKQLSQQDPSKPVENDQMIAQMASFATVDGIGKMN
KQFDSLNTSMTSNQALQASSLVGRDVLVPGAKGLKEADKGMAAMVKLPKAINSLLVRVENEQGQLIRTLNVGAKPAGDSR
VEWDGKDDKGNAMPAGRYSIKAAGVLDGENKEFGVSTYANVNSVLLGKGNGNVLLNLAGFASPMKLAEVLEIGKA

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=150, Percent_Identity=33.3333333333333, Blast_Score=99, Evalue=2e-22,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 25036; Mature: 24905

Theoretical pI: Translated: 8.82; Mature: 8.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGINNVGQQGLSYIDQLKSLQEANKPEKTTGGKNELKQEDFLALLTKQLSQQDPSKPVE
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
NDQMIAQMASFATVDGIGKMNKQFDSLNTSMTSNQALQASSLVGRDVLVPGAKGLKEADK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEECCCCCCHHHHHH
GMAAMVKLPKAINSLLVRVENEQGQLIRTLNVGAKPAGDSRVEWDGKDDKGNAMPAGRYS
HHHHHHHHHHHHHHHHEEEECCCCCEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCCEE
IKAAGVLDGENKEFGVSTYANVNSVLLGKGNGNVLLNLAGFASPMKLAEVLEIGKA
EEEEEEECCCCCCCCCEECCCCCEEEEECCCCCEEEEECCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
TGINNVGQQGLSYIDQLKSLQEANKPEKTTGGKNELKQEDFLALLTKQLSQQDPSKPVE
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
NDQMIAQMASFATVDGIGKMNKQFDSLNTSMTSNQALQASSLVGRDVLVPGAKGLKEADK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEECCCCCCHHHHHH
GMAAMVKLPKAINSLLVRVENEQGQLIRTLNVGAKPAGDSRVEWDGKDDKGNAMPAGRYS
HHHHHHHHHHHHHHHHEEEECCCCCEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCCEE
IKAAGVLDGENKEFGVSTYANVNSVLLGKGNGNVLLNLAGFASPMKLAEVLEIGKA
EEEEEEECCCCCCCCCEECCCCCEEEEECCCCCEEEEECCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10993077 [H]