| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
Click here to switch to the map view.
The map label for this gene is 209695753
Identifier: 209695753
GI number: 209695753
Start: 2499918
End: 2500295
Strand: Reverse
Name: 209695753
Synonym: VSAL_I2326
Alternate gene names: NA
Gene position: 2500295-2499918 (Counterclockwise)
Preceding gene: 209695754
Following gene: 209695752
Centisome position: 75.19
GC content: 35.19
Gene sequence:
>378_bases GTGAATTCATTCTTACGTTTTTTATTATTAAGTTCTCTGCCTTTTTCTGCATTAAGTGTTCAACCGCAGTATTCTTCTTT ATCTGTTTCCAATTCTGATTCGTTTATTTTAGCAAAGTCATGCATTGATTCTAGCGTCGTCTCCTATTTTGAAGAGAAAG GGATTACCCCTGACAACAGTCATATTCAAGGGTATGGTTCGTGCTTTAATGTGCCTAAATACAAAGTGAAACACTCATCA AAAAAGGATTTGAAACACTACTTAGGTGAAGGGTGTTCAGATCCTGCACTTATTAAACTATTGAAAAGTGAAGGTATTGA TCCTCGCTATTATCAAATAGAAAGTAGTGAGCGCTGTCAGCATCAAAATATCAGTTAA
Upstream 100 bases:
>100_bases GCCCCGCAAGGGGCTTTCCCTCAAATTTCACCCTATTTTATTTAGAAAATCACACAACGGTCGATGACTTACTGTCTATT TATTTAAGTAAGGTCATGTT
Downstream 100 bases:
>100_bases GCTTTGAGTATTTAGGCCGATATACTTATTAAGATAAAAATTCATTAAGAGATTGTTATGTCTGTAACGGTAAACACCAA TGTGTCTGCAATGACGGCAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 125; Mature: 125
Protein sequence:
>125_residues MNSFLRFLLLSSLPFSALSVQPQYSSLSVSNSDSFILAKSCIDSSVVSYFEEKGITPDNSHIQGYGSCFNVPKYKVKHSS KKDLKHYLGEGCSDPALIKLLKSEGIDPRYYQIESSERCQHQNIS
Sequences:
>Translated_125_residues MNSFLRFLLLSSLPFSALSVQPQYSSLSVSNSDSFILAKSCIDSSVVSYFEEKGITPDNSHIQGYGSCFNVPKYKVKHSS KKDLKHYLGEGCSDPALIKLLKSEGIDPRYYQIESSERCQHQNIS >Mature_125_residues MNSFLRFLLLSSLPFSALSVQPQYSSLSVSNSDSFILAKSCIDSSVVSYFEEKGITPDNSHIQGYGSCFNVPKYKVKHSS KKDLKHYLGEGCSDPALIKLLKSEGIDPRYYQIESSERCQHQNIS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13991; Mature: 13991
Theoretical pI: Translated: 7.96; Mature: 7.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.2 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 3.2 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSFLRFLLLSSLPFSALSVQPQYSSLSVSNSDSFILAKSCIDSSVVSYFEEKGITPDNS CHHHHHHHHHHCCCCCCEECCCCCCEEEECCCCCEEEHHHHHHHHHHHHHHHCCCCCCCC HIQGYGSCFNVPKYKVKHSSKKDLKHYLGEGCSDPALIKLLKSEGIDPRYYQIESSERCQ CCCCCCCCCCCCCEEECCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCC HQNIS CCCCC >Mature Secondary Structure MNSFLRFLLLSSLPFSALSVQPQYSSLSVSNSDSFILAKSCIDSSVVSYFEEKGITPDNS CHHHHHHHHHHCCCCCCEECCCCCCEEEECCCCCEEEHHHHHHHHHHHHHHHCCCCCCCC HIQGYGSCFNVPKYKVKHSSKKDLKHYLGEGCSDPALIKLLKSEGIDPRYYQIESSERCQ CCCCCCCCCCCCCEEECCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCC HQNIS CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA