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The map label for this gene is fliR [H]

Identifier: 209695728

GI number: 209695728

Start: 2470584

End: 2471366

Strand: Reverse

Name: fliR [H]

Synonym: VSAL_I2296

Alternate gene names: 209695728

Gene position: 2471366-2470584 (Counterclockwise)

Preceding gene: 209695729

Following gene: 209695727

Centisome position: 74.32

GC content: 41.38

Gene sequence:

>783_bases
ATGGAATACCCAACTCAAATAGTTTTAGATTTTATTGCGACCTATTTTTGGCCCTACACTCGAATTTCTTCCATGTTGAT
GGTGATGTCGGTGTTTGGGGCTCGATTTGTGTCACCTAAAATTCGACTGTATTTGGGATTAAGTATTACGTTTGCGGTCA
TGCCTGCGATTCCTGCAATGCCTCCTGAAATCCAATTGTTGTCTTTTCAAGGTTTTATGACCACTGCGGAGCAAATCATC
ATTGGTGTTGCGATGGGAATGGTGACTGTTTTTGTTACCCAAACATTCGTCTTACTTGGGCAAATTTTGGGTATGCAATC
GAGCTTAGGTTTTGCCTCTATGGTTGACCCGGCTAATGGTCAAAATACCCCTTTGCTTGGGCAATTGTTTATGTTTTTGT
CGATCTTGTTCTTTTTAGGAACTGATGGGCACTTAAAAATGATTAACTTTGCGGTGATGAGTTTCACTACGTTGCCTGTC
GGAGTCGGTAAATTAACCAGTGTTGATTTTCAATCTCTTGCTGGTTGGCTTGGTATTATGATGAAAGCCGGTTTAAGTAT
GTCATTGTCTGGGATCATCGCGCTACTTACGGTGAATTTATCGTTTGGTGTTATGACTCGTGCCGCACCGCAATTAAACA
TTTTCTCATTGGGTTTTGCGTTTGCATTACTGGTTGGTTTACTGCTGACGTCTTACATTGTTCTTGGGTTATTCACTCAT
TATGATTTGCATTGGGGTCGTGCTGAAGCACAGATCTGTAGCCTAATAAGGTTGGATTGTTGA

Upstream 100 bases:

>100_bases
ATGAGCTGATCGCTCGAATGCCGACGATACTTTATTAATCCAGTGTTGATACACAACGACTTGATGACTAAATACAAATT
ACTAAGCACAAGCTGATGTT

Downstream 100 bases:

>100_bases
TGAAGACACTGAAGTCGATGGAGAGTCATAATGGCTGATAGTGACGGTCAAGAACGCACCGAAGACGCCACGTCCAAACG
CTTGCAACAGGCCAAAGATA

Product: flagellar biosynthesis protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MEYPTQIVLDFIATYFWPYTRISSMLMVMSVFGARFVSPKIRLYLGLSITFAVMPAIPAMPPEIQLLSFQGFMTTAEQII
IGVAMGMVTVFVTQTFVLLGQILGMQSSLGFASMVDPANGQNTPLLGQLFMFLSILFFLGTDGHLKMINFAVMSFTTLPV
GVGKLTSVDFQSLAGWLGIMMKAGLSMSLSGIIALLTVNLSFGVMTRAAPQLNIFSLGFAFALLVGLLLTSYIVLGLFTH
YDLHWGRAEAQICSLIRLDC

Sequences:

>Translated_260_residues
MEYPTQIVLDFIATYFWPYTRISSMLMVMSVFGARFVSPKIRLYLGLSITFAVMPAIPAMPPEIQLLSFQGFMTTAEQII
IGVAMGMVTVFVTQTFVLLGQILGMQSSLGFASMVDPANGQNTPLLGQLFMFLSILFFLGTDGHLKMINFAVMSFTTLPV
GVGKLTSVDFQSLAGWLGIMMKAGLSMSLSGIIALLTVNLSFGVMTRAAPQLNIFSLGFAFALLVGLLLTSYIVLGLFTH
YDLHWGRAEAQICSLIRLDC
>Mature_260_residues
MEYPTQIVLDFIATYFWPYTRISSMLMVMSVFGARFVSPKIRLYLGLSITFAVMPAIPAMPPEIQLLSFQGFMTTAEQII
IGVAMGMVTVFVTQTFVLLGQILGMQSSLGFASMVDPANGQNTPLLGQLFMFLSILFFLGTDGHLKMINFAVMSFTTLPV
GVGKLTSVDFQSLAGWLGIMMKAGLSMSLSGIIALLTVNLSFGVMTRAAPQLNIFSLGFAFALLVGLLLTSYIVLGLFTH
YDLHWGRAEAQICSLIRLDC

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=219, Percent_Identity=36.5296803652968, Blast_Score=118, Evalue=4e-28,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 28391; Mature: 28391

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
6.9 %Met     (Translated Protein)
7.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
6.9 %Met     (Mature Protein)
7.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure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HCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8412685; 7934865 [H]