Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209695631

Identifier: 209695631

GI number: 209695631

Start: 2358242

End: 2358670

Strand: Direct

Name: 209695631

Synonym: VSAL_I2194

Alternate gene names: NA

Gene position: 2358242-2358670 (Clockwise)

Preceding gene: 209695625

Following gene: 209695636

Centisome position: 70.92

GC content: 36.83

Gene sequence:

>429_bases
ATGAACAAAAAACTATTGTTACCTTTATTATTTTCGGTTGTTTTAGTGGGTTGCAATGACGCAAGTGAAGCCATTGATAA
AGCACAAAATGCGGCAAATAAAGCAGTAGACATGGCTCAAACAAAATTAGAATTAATTAATTTAAGTGATCTTAATATTG
ATGAATTTGGTGATGCAGCTATATCAGCAAAAGCATTTGCAACATCGGTTGATGAGGCGTTGAATGCCGATTACAGCAAT
CCAGAAGCATTGGTTGAAGTGAAAGCGCACATTTCGAATGCGTATAGCTGTTTAGTGGCGGCATCATCAGAATCAACAGC
AGAAAATGTGGTTGATAAAGTAATGGCAACAATTTCAAATGAAAATGCTGAAAGCTTAATTGAGAAAGGCGTCGAACGTG
CACAAGATATGACAGAGTGCGTAATGTAA

Upstream 100 bases:

>100_bases
ACTCCGCGGTTCATACTTAGATACACGCTAACCATCTCATTTAATTAATTTTCTGTTACTCTGTTTTGGTTATATTGGCA
ATTTTATAGTGAGATAAAAA

Downstream 100 bases:

>100_bases
TCTTGAATGAGTAATACTAAATAAAAAAGCCCTGTAACAATCGCTCTTTAAAGGCGTTTGATACGGGGCTCTTTAGTGCT
TATAAATCTGTTAGGTTAAT

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MNKKLLLPLLFSVVLVGCNDASEAIDKAQNAANKAVDMAQTKLELINLSDLNIDEFGDAAISAKAFATSVDEALNADYSN
PEALVEVKAHISNAYSCLVAASSESTAENVVDKVMATISNENAESLIEKGVERAQDMTECVM

Sequences:

>Translated_142_residues
MNKKLLLPLLFSVVLVGCNDASEAIDKAQNAANKAVDMAQTKLELINLSDLNIDEFGDAAISAKAFATSVDEALNADYSN
PEALVEVKAHISNAYSCLVAASSESTAENVVDKVMATISNENAESLIEKGVERAQDMTECVM
>Mature_142_residues
MNKKLLLPLLFSVVLVGCNDASEAIDKAQNAANKAVDMAQTKLELINLSDLNIDEFGDAAISAKAFATSVDEALNADYSN
PEALVEVKAHISNAYSCLVAASSESTAENVVDKVMATISNENAESLIEKGVERAQDMTECVM

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15084; Mature: 15084

Theoretical pI: Translated: 4.00; Mature: 4.00

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKKLLLPLLFSVVLVGCNDASEAIDKAQNAANKAVDMAQTKLELINLSDLNIDEFGDAA
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCHH
ISAKAFATSVDEALNADYSNPEALVEVKAHISNAYSCLVAASSESTAENVVDKVMATISN
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHCC
ENAESLIEKGVERAQDMTECVM
CCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNKKLLLPLLFSVVLVGCNDASEAIDKAQNAANKAVDMAQTKLELINLSDLNIDEFGDAA
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCHH
ISAKAFATSVDEALNADYSNPEALVEVKAHISNAYSCLVAASSESTAENVVDKVMATISN
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHCC
ENAESLIEKGVERAQDMTECVM
CCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA