| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695631
Identifier: 209695631
GI number: 209695631
Start: 2358242
End: 2358670
Strand: Direct
Name: 209695631
Synonym: VSAL_I2194
Alternate gene names: NA
Gene position: 2358242-2358670 (Clockwise)
Preceding gene: 209695625
Following gene: 209695636
Centisome position: 70.92
GC content: 36.83
Gene sequence:
>429_bases ATGAACAAAAAACTATTGTTACCTTTATTATTTTCGGTTGTTTTAGTGGGTTGCAATGACGCAAGTGAAGCCATTGATAA AGCACAAAATGCGGCAAATAAAGCAGTAGACATGGCTCAAACAAAATTAGAATTAATTAATTTAAGTGATCTTAATATTG ATGAATTTGGTGATGCAGCTATATCAGCAAAAGCATTTGCAACATCGGTTGATGAGGCGTTGAATGCCGATTACAGCAAT CCAGAAGCATTGGTTGAAGTGAAAGCGCACATTTCGAATGCGTATAGCTGTTTAGTGGCGGCATCATCAGAATCAACAGC AGAAAATGTGGTTGATAAAGTAATGGCAACAATTTCAAATGAAAATGCTGAAAGCTTAATTGAGAAAGGCGTCGAACGTG CACAAGATATGACAGAGTGCGTAATGTAA
Upstream 100 bases:
>100_bases ACTCCGCGGTTCATACTTAGATACACGCTAACCATCTCATTTAATTAATTTTCTGTTACTCTGTTTTGGTTATATTGGCA ATTTTATAGTGAGATAAAAA
Downstream 100 bases:
>100_bases TCTTGAATGAGTAATACTAAATAAAAAAGCCCTGTAACAATCGCTCTTTAAAGGCGTTTGATACGGGGCTCTTTAGTGCT TATAAATCTGTTAGGTTAAT
Product: lipoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 142; Mature: 142
Protein sequence:
>142_residues MNKKLLLPLLFSVVLVGCNDASEAIDKAQNAANKAVDMAQTKLELINLSDLNIDEFGDAAISAKAFATSVDEALNADYSN PEALVEVKAHISNAYSCLVAASSESTAENVVDKVMATISNENAESLIEKGVERAQDMTECVM
Sequences:
>Translated_142_residues MNKKLLLPLLFSVVLVGCNDASEAIDKAQNAANKAVDMAQTKLELINLSDLNIDEFGDAAISAKAFATSVDEALNADYSN PEALVEVKAHISNAYSCLVAASSESTAENVVDKVMATISNENAESLIEKGVERAQDMTECVM >Mature_142_residues MNKKLLLPLLFSVVLVGCNDASEAIDKAQNAANKAVDMAQTKLELINLSDLNIDEFGDAAISAKAFATSVDEALNADYSN PEALVEVKAHISNAYSCLVAASSESTAENVVDKVMATISNENAESLIEKGVERAQDMTECVM
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15084; Mature: 15084
Theoretical pI: Translated: 4.00; Mature: 4.00
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKKLLLPLLFSVVLVGCNDASEAIDKAQNAANKAVDMAQTKLELINLSDLNIDEFGDAA CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCHH ISAKAFATSVDEALNADYSNPEALVEVKAHISNAYSCLVAASSESTAENVVDKVMATISN HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHCC ENAESLIEKGVERAQDMTECVM CCHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MNKKLLLPLLFSVVLVGCNDASEAIDKAQNAANKAVDMAQTKLELINLSDLNIDEFGDAA CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCHH ISAKAFATSVDEALNADYSNPEALVEVKAHISNAYSCLVAASSESTAENVVDKVMATISN HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHCC ENAESLIEKGVERAQDMTECVM CCHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA