| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695613
Identifier: 209695613
GI number: 209695613
Start: 2335631
End: 2336056
Strand: Reverse
Name: 209695613
Synonym: VSAL_I2174
Alternate gene names: NA
Gene position: 2336056-2335631 (Counterclockwise)
Preceding gene: 209695616
Following gene: 209695609
Centisome position: 70.25
GC content: 37.79
Gene sequence:
>426_bases ATGGCTTTTCAATTACATCCACGTTTACAGCAAGATTGCGTCCTTTTAGGGGATCTTCCACTATGCCAAGTTTTATTAAT AAAAGAAGACATTGGTCCTTGGCTTATTTTAGTTCCTCGTATAAATGATCTGAAAGAAATTCACCACATGACTCCAGAGC AACAAGGTCAGTTTATTCAAGAGTCGAGCGCTGTCGCACAACTTTTAGAAGATAATTTTTCTCCAGACAAAATTAACCTA GGCGCATTAGGTAATTTAGTTCCTCAATTGCATATTCACCATATTGCTCGTTTTACGACTGATGTTGCATGGCCTGGGCC TGTATGGGGGAATACAACGGGAACCATTAGAGAGCAATCATCTCAAACTAAGTTAGTGGATTTACTTAGAGATAAATTAA TTTCTTTAGGTACATTTAAGCGCTAA
Upstream 100 bases:
>100_bases TTTTTATCGATTTTTTCGCTCATGAATCGCTTCACTTATTCTTTATTATGAACTGATTATGATATAACAAAGCATTACTG ATAGAAACCAAGGAAATGGA
Downstream 100 bases:
>100_bases TGTAAAGAAAAGACCTAGCCAATCATTAATGCATTAACTAGGTCTTCAATTATTTATTATTTACCATTCGAGTGACATTC AACTCATCTCTTGGCATTAA
Product: hypothetical protein
Products: NA
Alternate protein names: Histidine Triad Family Protein; HIT Family Hydrolase; Histidine Triad Domain Protein; Diadenosine Tetraphosphate Hydrolase; Histidine Triad; HIT Hydrolase; Pectate Lyase/Amb Allergen; HIT Family Protein; Diadenosine Tetraphosphate; HIT Domain-Containing Protein; HIT1 Protein; Diadenosine Tetraphosphate Hydrolase-Like Protein
Number of amino acids: Translated: 141; Mature: 140
Protein sequence:
>141_residues MAFQLHPRLQQDCVLLGDLPLCQVLLIKEDIGPWLILVPRINDLKEIHHMTPEQQGQFIQESSAVAQLLEDNFSPDKINL GALGNLVPQLHIHHIARFTTDVAWPGPVWGNTTGTIREQSSQTKLVDLLRDKLISLGTFKR
Sequences:
>Translated_141_residues MAFQLHPRLQQDCVLLGDLPLCQVLLIKEDIGPWLILVPRINDLKEIHHMTPEQQGQFIQESSAVAQLLEDNFSPDKINL GALGNLVPQLHIHHIARFTTDVAWPGPVWGNTTGTIREQSSQTKLVDLLRDKLISLGTFKR >Mature_140_residues AFQLHPRLQQDCVLLGDLPLCQVLLIKEDIGPWLILVPRINDLKEIHHMTPEQQGQFIQESSAVAQLLEDNFSPDKINLG ALGNLVPQLHIHHIARFTTDVAWPGPVWGNTTGTIREQSSQTKLVDLLRDKLISLGTFKR
Specific function: Unknown
COG id: COG0537
COG function: function code FGR; Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15902; Mature: 15770
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: PS51084 HIT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAFQLHPRLQQDCVLLGDLPLCQVLLIKEDIGPWLILVPRINDLKEIHHMTPEQQGQFIQ CCCCCCCCCCCCEEEECCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCHHHHHHHH ESSAVAQLLEDNFSPDKINLGALGNLVPQLHIHHIARFTTDVAWPGPVWGNTTGTIREQS HHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC SQTKLVDLLRDKLISLGTFKR HHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure AFQLHPRLQQDCVLLGDLPLCQVLLIKEDIGPWLILVPRINDLKEIHHMTPEQQGQFIQ CCCCCCCCCCCEEEECCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCHHHHHHHH ESSAVAQLLEDNFSPDKINLGALGNLVPQLHIHHIARFTTDVAWPGPVWGNTTGTIREQS HHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC SQTKLVDLLRDKLISLGTFKR HHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA