Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209695613

Identifier: 209695613

GI number: 209695613

Start: 2335631

End: 2336056

Strand: Reverse

Name: 209695613

Synonym: VSAL_I2174

Alternate gene names: NA

Gene position: 2336056-2335631 (Counterclockwise)

Preceding gene: 209695616

Following gene: 209695609

Centisome position: 70.25

GC content: 37.79

Gene sequence:

>426_bases
ATGGCTTTTCAATTACATCCACGTTTACAGCAAGATTGCGTCCTTTTAGGGGATCTTCCACTATGCCAAGTTTTATTAAT
AAAAGAAGACATTGGTCCTTGGCTTATTTTAGTTCCTCGTATAAATGATCTGAAAGAAATTCACCACATGACTCCAGAGC
AACAAGGTCAGTTTATTCAAGAGTCGAGCGCTGTCGCACAACTTTTAGAAGATAATTTTTCTCCAGACAAAATTAACCTA
GGCGCATTAGGTAATTTAGTTCCTCAATTGCATATTCACCATATTGCTCGTTTTACGACTGATGTTGCATGGCCTGGGCC
TGTATGGGGGAATACAACGGGAACCATTAGAGAGCAATCATCTCAAACTAAGTTAGTGGATTTACTTAGAGATAAATTAA
TTTCTTTAGGTACATTTAAGCGCTAA

Upstream 100 bases:

>100_bases
TTTTTATCGATTTTTTCGCTCATGAATCGCTTCACTTATTCTTTATTATGAACTGATTATGATATAACAAAGCATTACTG
ATAGAAACCAAGGAAATGGA

Downstream 100 bases:

>100_bases
TGTAAAGAAAAGACCTAGCCAATCATTAATGCATTAACTAGGTCTTCAATTATTTATTATTTACCATTCGAGTGACATTC
AACTCATCTCTTGGCATTAA

Product: hypothetical protein

Products: NA

Alternate protein names: Histidine Triad Family Protein; HIT Family Hydrolase; Histidine Triad Domain Protein; Diadenosine Tetraphosphate Hydrolase; Histidine Triad; HIT Hydrolase; Pectate Lyase/Amb Allergen; HIT Family Protein; Diadenosine Tetraphosphate; HIT Domain-Containing Protein; HIT1 Protein; Diadenosine Tetraphosphate Hydrolase-Like Protein

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MAFQLHPRLQQDCVLLGDLPLCQVLLIKEDIGPWLILVPRINDLKEIHHMTPEQQGQFIQESSAVAQLLEDNFSPDKINL
GALGNLVPQLHIHHIARFTTDVAWPGPVWGNTTGTIREQSSQTKLVDLLRDKLISLGTFKR

Sequences:

>Translated_141_residues
MAFQLHPRLQQDCVLLGDLPLCQVLLIKEDIGPWLILVPRINDLKEIHHMTPEQQGQFIQESSAVAQLLEDNFSPDKINL
GALGNLVPQLHIHHIARFTTDVAWPGPVWGNTTGTIREQSSQTKLVDLLRDKLISLGTFKR
>Mature_140_residues
AFQLHPRLQQDCVLLGDLPLCQVLLIKEDIGPWLILVPRINDLKEIHHMTPEQQGQFIQESSAVAQLLEDNFSPDKINLG
ALGNLVPQLHIHHIARFTTDVAWPGPVWGNTTGTIREQSSQTKLVDLLRDKLISLGTFKR

Specific function: Unknown

COG id: COG0537

COG function: function code FGR; Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15902; Mature: 15770

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS51084 HIT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFQLHPRLQQDCVLLGDLPLCQVLLIKEDIGPWLILVPRINDLKEIHHMTPEQQGQFIQ
CCCCCCCCCCCCEEEECCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCHHHHHHHH
ESSAVAQLLEDNFSPDKINLGALGNLVPQLHIHHIARFTTDVAWPGPVWGNTTGTIREQS
HHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
SQTKLVDLLRDKLISLGTFKR
HHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AFQLHPRLQQDCVLLGDLPLCQVLLIKEDIGPWLILVPRINDLKEIHHMTPEQQGQFIQ
CCCCCCCCCCCEEEECCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCHHHHHHHH
ESSAVAQLLEDNFSPDKINLGALGNLVPQLHIHHIARFTTDVAWPGPVWGNTTGTIREQS
HHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
SQTKLVDLLRDKLISLGTFKR
HHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA