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The map label for this gene is fadR [H]

Identifier: 209695588

GI number: 209695588

Start: 2304376

End: 2305218

Strand: Reverse

Name: fadR [H]

Synonym: VSAL_I2147

Alternate gene names: 209695588

Gene position: 2305218-2304376 (Counterclockwise)

Preceding gene: 209695591

Following gene: 209695587

Centisome position: 69.33

GC content: 33.69

Gene sequence:

>843_bases
ATGGTTATTAAGGCTAAAAGTCCTGCCGGATTTGCTGAAAAATACATTATAGAAAGCATTTGGAATGGTCGATTTCCTCC
AGGTTCAATCTTACCAGCAGAACGTGAATTATCTGAATTAATCGGGGTTACAAGAACAACGCTTCGAGAAGTATTACAAC
GCCTTTCTCGTGATGGTTGGTTAACGATTCAACATGGTAAACCAACAAAAGTTAATGATTATATGGAGACGTCGGGTCTT
CATATTTTAGATACATTAATGACATTAGTTGATGCAAATAATGCGACTTCAATTGTTGAAGACTTATTGGCAGCAAGAAC
TAATATTAGTTGTATCTTTATGAGACAAGCATTTAAGACCAATAAAGAAGGATCTCTTCGCACATTAGACCGAGTAATTG
AGTCTTGTGAGCAGTTAATTGCAGCAGAAAGCTGGGATAAATTTATTGAAGAATCTCCATTTGGGACAAAACTTAAAGCT
GAAATAAAAGAAGATAATGAAAAAGATCCAATAAAGCGCCAAGAGTTGTTAATTGCAAAAACCTTTAATTATTATGATTA
TATGTTATTTCAAGGTATTGCATTTAAATCAGGCAACCAAATATATGGACTGATCTTTAATGGTCTTAAAAAGCTTTATG
CTCGTGTTGGTAGTTATTATTTCTCAAGCGATGAAGCAAGAGAATTAGCATTACAGTTTTATCGAGACCTAAAACAGATT
TGTGAAGAAGAAAGAAAAGATGCTGTAATGCCGAGAATGCGTCAGTATGGTATTGAAGGCAATCTTATCTGGAATGAAAT
GAAAAAGAATTTACCAAGTAATTTTAGAGAAGATGATAGTTAA

Upstream 100 bases:

>100_bases
GGCCTTAATTCGGTTTCAAATTAAGAAATAGTTAAGAATTTGTTTAAGTGGTGGTATGATGAGTTTAGTTATTTTAATAA
AAAATGGATCGTAAACTTGT

Downstream 100 bases:

>100_bases
TTTCATCTAAAAATACATAAAAGGCAGGCTAATATAGCCTGCCTTTTTTTTGTTCTAAATTTATAAAAGTAGTTATATTC
TGTATTTTTTGTCATTTAAT

Product: fatty acid metabolism regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MVIKAKSPAGFAEKYIIESIWNGRFPPGSILPAERELSELIGVTRTTLREVLQRLSRDGWLTIQHGKPTKVNDYMETSGL
HILDTLMTLVDANNATSIVEDLLAARTNISCIFMRQAFKTNKEGSLRTLDRVIESCEQLIAAESWDKFIEESPFGTKLKA
EIKEDNEKDPIKRQELLIAKTFNYYDYMLFQGIAFKSGNQIYGLIFNGLKKLYARVGSYYFSSDEARELALQFYRDLKQI
CEEERKDAVMPRMRQYGIEGNLIWNEMKKNLPSNFREDDS

Sequences:

>Translated_280_residues
MVIKAKSPAGFAEKYIIESIWNGRFPPGSILPAERELSELIGVTRTTLREVLQRLSRDGWLTIQHGKPTKVNDYMETSGL
HILDTLMTLVDANNATSIVEDLLAARTNISCIFMRQAFKTNKEGSLRTLDRVIESCEQLIAAESWDKFIEESPFGTKLKA
EIKEDNEKDPIKRQELLIAKTFNYYDYMLFQGIAFKSGNQIYGLIFNGLKKLYARVGSYYFSSDEARELALQFYRDLKQI
CEEERKDAVMPRMRQYGIEGNLIWNEMKKNLPSNFREDDS
>Mature_280_residues
MVIKAKSPAGFAEKYIIESIWNGRFPPGSILPAERELSELIGVTRTTLREVLQRLSRDGWLTIQHGKPTKVNDYMETSGL
HILDTLMTLVDANNATSIVEDLLAARTNISCIFMRQAFKTNKEGSLRTLDRVIESCEQLIAAESWDKFIEESPFGTKLKA
EIKEDNEKDPIKRQELLIAKTFNYYDYMLFQGIAFKSGNQIYGLIFNGLKKLYARVGSYYFSSDEARELALQFYRDLKQI
CEEERKDAVMPRMRQYGIEGNLIWNEMKKNLPSNFREDDS

Specific function: Multifunctional regulator of fatty acid metabolism [H]

COG id: COG2186

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787436, Length=275, Percent_Identity=51.2727272727273, Blast_Score=274, Evalue=5e-75,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014178
- InterPro:   IPR008920
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07840 FadR_C; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 32282; Mature: 32282

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVIKAKSPAGFAEKYIIESIWNGRFPPGSILPAERELSELIGVTRTTLREVLQRLSRDGW
CEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
LTIQHGKPTKVNDYMETSGLHILDTLMTLVDANNATSIVEDLLAARTNISCIFMRQAFKT
EEEECCCCCCCHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHEEHHHHHCC
NKEGSLRTLDRVIESCEQLIAAESWDKFIEESPFGTKLKAEIKEDNEKDPIKRQELLIAK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHH
TFNYYDYMLFQGIAFKSGNQIYGLIFNGLKKLYARVGSYYFSSDEARELALQFYRDLKQI
HHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
CEEERKDAVMPRMRQYGIEGNLIWNEMKKNLPSNFREDDS
HHHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MVIKAKSPAGFAEKYIIESIWNGRFPPGSILPAERELSELIGVTRTTLREVLQRLSRDGW
CEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
LTIQHGKPTKVNDYMETSGLHILDTLMTLVDANNATSIVEDLLAARTNISCIFMRQAFKT
EEEECCCCCCCHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHEEHHHHHCC
NKEGSLRTLDRVIESCEQLIAAESWDKFIEESPFGTKLKAEIKEDNEKDPIKRQELLIAK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHH
TFNYYDYMLFQGIAFKSGNQIYGLIFNGLKKLYARVGSYYFSSDEARELALQFYRDLKQI
HHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
CEEERKDAVMPRMRQYGIEGNLIWNEMKKNLPSNFREDDS
HHHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA; DNA [C]

Specific reaction: Activates transcription of at least two genes required for unsaturated fatty acid biosynthesis; activates the iclR gene encoding the transcription regulator of the aceBAKoperon which in turn encodes the glyoxylate shunt enzymes Protein + DNA = Protein-DN

General reaction: NA

Inhibitor: Fatty acyl CoA compounds [C]

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12620739 [H]