| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695519
Identifier: 209695519
GI number: 209695519
Start: 2224789
End: 2225283
Strand: Reverse
Name: 209695519
Synonym: VSAL_I2073
Alternate gene names: NA
Gene position: 2225283-2224789 (Counterclockwise)
Preceding gene: 209695522
Following gene: 209695518
Centisome position: 66.92
GC content: 35.15
Gene sequence:
>495_bases ATGCCTAAAGATTTTAGTTTTACTACAGAATACACTCTCGACAAGACCTTCTTTGCTGAATGTTATGATCAAACTAGCCG CTCTGTTAAATTTCCAAAAGCCTATTTAAAAGGAATACTTTTTTTTCTTTTTGGTGTGGTTTTATTAAAACTTGAACTAT TACCTAATGGTTATGTTGGTTGGTTCTTTATTGTTTTGAGTATTATTGAGGGGCTCAATATCTATTTTAAGAGAACTTGG TGGTTATGGAGACAAAAAATCAGCTCGATCTTTGGCAGTAAAGTGGTATTCCAGGTTGACTCTAACGGTGTGAGTTATAA AAACGGTACAAACACCCGTAATATCGCCTGGAGTGAAATCGAACAACTTCAACAAAGCGATTTAGGGTTTATCTTTCACA TGGGTAAACAGCGCCAATATGTCAGTAAATCTTGCTTAAATGATGAAGAGATCGCATTCATTGCAGAGCAGCACGCAATA TCAAAAATAAACTAA
Upstream 100 bases:
>100_bases TAAAATAGCTAAAGAAAAGTACCGAAAAGCGGTACAATAAATGAGTTGCGAGATTGCAGCATGGGATACTCATTCACATA AAACCGTAAAGTAGCCACAT
Downstream 100 bases:
>100_bases CGTCATTGCGTGAAAAATAACATTTTATCCAATATCAAGCCGCATTCCCTGCGGCTTTTTATTGTCTATCTACCCCTCGA CGCCAATCTCAAACCCTGTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 164; Mature: 163
Protein sequence:
>164_residues MPKDFSFTTEYTLDKTFFAECYDQTSRSVKFPKAYLKGILFFLFGVVLLKLELLPNGYVGWFFIVLSIIEGLNIYFKRTW WLWRQKISSIFGSKVVFQVDSNGVSYKNGTNTRNIAWSEIEQLQQSDLGFIFHMGKQRQYVSKSCLNDEEIAFIAEQHAI SKIN
Sequences:
>Translated_164_residues MPKDFSFTTEYTLDKTFFAECYDQTSRSVKFPKAYLKGILFFLFGVVLLKLELLPNGYVGWFFIVLSIIEGLNIYFKRTW WLWRQKISSIFGSKVVFQVDSNGVSYKNGTNTRNIAWSEIEQLQQSDLGFIFHMGKQRQYVSKSCLNDEEIAFIAEQHAI SKIN >Mature_163_residues PKDFSFTTEYTLDKTFFAECYDQTSRSVKFPKAYLKGILFFLFGVVLLKLELLPNGYVGWFFIVLSIIEGLNIYFKRTWW LWRQKISSIFGSKVVFQVDSNGVSYKNGTNTRNIAWSEIEQLQQSDLGFIFHMGKQRQYVSKSCLNDEEIAFIAEQHAIS KIN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19144; Mature: 19013
Theoretical pI: Translated: 9.02; Mature: 9.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKDFSFTTEYTLDKTFFAECYDQTSRSVKFPKAYLKGILFFLFGVVLLKLELLPNGYVG CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHH WFFIVLSIIEGLNIYFKRTWWLWRQKISSIFGSKVVFQVDSNGVSYKNGTNTRNIAWSEI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCHHHH EQLQQSDLGFIFHMGKQRQYVSKSCLNDEEIAFIAEQHAISKIN HHHHHCCCCEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHCCC >Mature Secondary Structure PKDFSFTTEYTLDKTFFAECYDQTSRSVKFPKAYLKGILFFLFGVVLLKLELLPNGYVG CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHH WFFIVLSIIEGLNIYFKRTWWLWRQKISSIFGSKVVFQVDSNGVSYKNGTNTRNIAWSEI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCHHHH EQLQQSDLGFIFHMGKQRQYVSKSCLNDEEIAFIAEQHAISKIN HHHHHCCCCEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA